miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18532 3' -53.3 NC_004681.1 + 74290 0.66 0.868258
Target:  5'- -cGUGGCCUacugCGGacagaaACGUUGCGCUg -3'
miRNA:   3'- aaCGCUGGAa---GCUag----UGCAACGCGAg -5'
18532 3' -53.3 NC_004681.1 + 28790 0.66 0.851709
Target:  5'- aUGCGACCagcgCGAaCACGUcaGCGCcCg -3'
miRNA:   3'- aACGCUGGaa--GCUaGUGCAa-CGCGaG- -5'
18532 3' -53.3 NC_004681.1 + 27423 0.66 0.851709
Target:  5'- gUGUGACC-UCGAUguCG-UGCGC-Ca -3'
miRNA:   3'- aACGCUGGaAGCUAguGCaACGCGaG- -5'
18532 3' -53.3 NC_004681.1 + 73698 0.66 0.851708
Target:  5'- -cGUGACg--UGGUCACGUUGCcugaagucGCUCa -3'
miRNA:   3'- aaCGCUGgaaGCUAGUGCAACG--------CGAG- -5'
18532 3' -53.3 NC_004681.1 + 9409 0.66 0.851708
Target:  5'- -cGCG-CCUUCGGUCAUccagacCGCUCg -3'
miRNA:   3'- aaCGCuGGAAGCUAGUGcaac--GCGAG- -5'
18532 3' -53.3 NC_004681.1 + 20275 0.66 0.843081
Target:  5'- -gGCGACaagUCGAUCACcgaGCGCa- -3'
miRNA:   3'- aaCGCUGga-AGCUAGUGcaaCGCGag -5'
18532 3' -53.3 NC_004681.1 + 29861 0.67 0.815891
Target:  5'- cUGC-ACCUggcagcaGGUCGCGgaaGCGCUCg -3'
miRNA:   3'- aACGcUGGAag-----CUAGUGCaa-CGCGAG- -5'
18532 3' -53.3 NC_004681.1 + 32544 0.67 0.806424
Target:  5'- -cGCGAUCUgcucagCGAUgccCACGaUGUGCUCc -3'
miRNA:   3'- aaCGCUGGAa-----GCUA---GUGCaACGCGAG- -5'
18532 3' -53.3 NC_004681.1 + 41204 0.68 0.75654
Target:  5'- cUGCGuauCCagUCGAUUACGUacGUGCUCc -3'
miRNA:   3'- aACGCu--GGa-AGCUAGUGCAa-CGCGAG- -5'
18532 3' -53.3 NC_004681.1 + 24217 0.68 0.746132
Target:  5'- -cGCGGCCU--GAUCAaguCGgaGCGCUCc -3'
miRNA:   3'- aaCGCUGGAagCUAGU---GCaaCGCGAG- -5'
18532 3' -53.3 NC_004681.1 + 5686 0.69 0.714254
Target:  5'- -aGCGGCCagUUCGA-C-UGUUGCGCUUg -3'
miRNA:   3'- aaCGCUGG--AAGCUaGuGCAACGCGAG- -5'
18532 3' -53.3 NC_004681.1 + 1219 0.69 0.703449
Target:  5'- -cGCGGCCUUCGuagAUGgccuugagGCGCUCg -3'
miRNA:   3'- aaCGCUGGAAGCuagUGCaa------CGCGAG- -5'
18532 3' -53.3 NC_004681.1 + 33708 0.69 0.681639
Target:  5'- -gGCGACCUuggcgUUGAUguCGUcGCGCUUg -3'
miRNA:   3'- aaCGCUGGA-----AGCUAguGCAaCGCGAG- -5'
18532 3' -53.3 NC_004681.1 + 61850 0.7 0.659638
Target:  5'- -gGCGGCCg-CGGUCugGUgGCGCg- -3'
miRNA:   3'- aaCGCUGGaaGCUAGugCAaCGCGag -5'
18532 3' -53.3 NC_004681.1 + 72136 1.07 0.002627
Target:  5'- gUUGCGACCUUCGAUCACGUUGCGCUCu -3'
miRNA:   3'- -AACGCUGGAAGCUAGUGCAACGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.