Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18534 | 3' | -54.9 | NC_004681.1 | + | 7979 | 0.66 | 0.805092 |
Target: 5'- gCGGCgGCGGUcucaUCGACGGgCgcgggcucuucgUCAGCGg -3' miRNA: 3'- gGCUGaCGUCA----AGCUGUCgG------------AGUCGC- -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 8941 | 0.66 | 0.840839 |
Target: 5'- gCCuGCUGCAgcGUUCGAcCGGCUUCAccGCc -3' miRNA: 3'- -GGcUGACGU--CAAGCU-GUCGGAGU--CGc -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 12105 | 0.66 | 0.805092 |
Target: 5'- aUCGG-UGUAGUUCGGCuugguGGCCUuguagcCAGCGg -3' miRNA: 3'- -GGCUgACGUCAAGCUG-----UCGGA------GUCGC- -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 12807 | 0.66 | 0.832194 |
Target: 5'- aCCGacgcaGCUGCAGcaCGuACGGCCaUUGGCGc -3' miRNA: 3'- -GGC-----UGACGUCaaGC-UGUCGG-AGUCGC- -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 14660 | 0.68 | 0.715577 |
Target: 5'- gCGACUGCGGccguggUGGCGGUggCGGCGa -3' miRNA: 3'- gGCUGACGUCaa----GCUGUCGgaGUCGC- -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 18290 | 0.66 | 0.832194 |
Target: 5'- aCGGCcGCAGUccUCGACuGGCggUCAGCa -3' miRNA: 3'- gGCUGaCGUCA--AGCUG-UCGg-AGUCGc -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 18375 | 0.74 | 0.398596 |
Target: 5'- aUCGACaugGCAGgccaggCGGCGGCCgCGGCGg -3' miRNA: 3'- -GGCUGa--CGUCaa----GCUGUCGGaGUCGC- -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 19351 | 0.7 | 0.623961 |
Target: 5'- aCCGACg--AGUUCGACcgggucgaccacaccGGCCUgGGCGa -3' miRNA: 3'- -GGCUGacgUCAAGCUG---------------UCGGAgUCGC- -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 20170 | 0.67 | 0.776438 |
Target: 5'- cCCGGCUGCgcucGGUgaUCGACuugucGCCcaaUCAGCc -3' miRNA: 3'- -GGCUGACG----UCA--AGCUGu----CGG---AGUCGc -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 26397 | 0.69 | 0.67329 |
Target: 5'- cCCGGC-GCAGUgCGGCcacgucggaugAGUCUCGGUGg -3' miRNA: 3'- -GGCUGaCGUCAaGCUG-----------UCGGAGUCGC- -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 27756 | 0.66 | 0.840839 |
Target: 5'- gUGACgcgcgGCAGcggCGGCAGCggCGGCGc -3' miRNA: 3'- gGCUGa----CGUCaa-GCUGUCGgaGUCGC- -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 28143 | 0.68 | 0.715577 |
Target: 5'- gCGGCgGCGGaUCGAgCGGCggCAGCGg -3' miRNA: 3'- gGCUGaCGUCaAGCU-GUCGgaGUCGC- -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 30576 | 0.67 | 0.754596 |
Target: 5'- aCCGGCgcaagcgccaagGCGGUUCG-CuGCCUgaCGGCGu -3' miRNA: 3'- -GGCUGa-----------CGUCAAGCuGuCGGA--GUCGC- -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 41766 | 0.71 | 0.534808 |
Target: 5'- aCCucCUGCAcgccuccagGUUCGACGGCCUUcGCGc -3' miRNA: 3'- -GGcuGACGU---------CAAGCUGUCGGAGuCGC- -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 42337 | 0.67 | 0.756607 |
Target: 5'- -gGACcaGCAGcUCGGCGGCCgUguGCGg -3' miRNA: 3'- ggCUGa-CGUCaAGCUGUCGG-AguCGC- -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 44649 | 0.67 | 0.794751 |
Target: 5'- aCCGACUGCaccgugcaggccaAGgacacccuccUCGACGGCaaCGGCGa -3' miRNA: 3'- -GGCUGACG-------------UCa---------AGCUGUCGgaGUCGC- -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 46715 | 0.72 | 0.48384 |
Target: 5'- gCGugUGCGGggCGGgGuCCUCGGCGa -3' miRNA: 3'- gGCugACGUCaaGCUgUcGGAGUCGC- -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 47232 | 0.69 | 0.641149 |
Target: 5'- cUCG-C-GCAGUUCGGCgcGGCCcUCGGCGu -3' miRNA: 3'- -GGCuGaCGUCAAGCUG--UCGG-AGUCGC- -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 51719 | 0.68 | 0.705096 |
Target: 5'- cCCGGggaacCUGguGgucgUCGGCGGCCgcccCGGCGc -3' miRNA: 3'- -GGCU-----GACguCa---AGCUGUCGGa---GUCGC- -5' |
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18534 | 3' | -54.9 | NC_004681.1 | + | 61362 | 0.67 | 0.794751 |
Target: 5'- cCCGucGCUGCGGUgggCaACAGCUcgcguguccaaggUCGGCGg -3' miRNA: 3'- -GGC--UGACGUCAa--GcUGUCGG-------------AGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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