Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18534 | 3' | -54.9 | NC_004681.1 | + | 72099 | 0.68 | 0.704044 |
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Target: 5'- cUCGAUUGCAGUcuucaugUC-ACAGCC-CAGCc -3' miRNA: 3'- -GGCUGACGUCA-------AGcUGUCGGaGUCGc -5' |
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| 18534 | 3' | -54.9 | NC_004681.1 | + | 26397 | 0.69 | 0.67329 |
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Target: 5'- cCCGGC-GCAGUgCGGCcacgucggaugAGUCUCGGUGg -3' miRNA: 3'- -GGCUGaCGUCAaGCUG-----------UCGGAGUCGC- -5' |
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| 18534 | 3' | -54.9 | NC_004681.1 | + | 47232 | 0.69 | 0.641149 |
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Target: 5'- cUCG-C-GCAGUUCGGCgcGGCCcUCGGCGu -3' miRNA: 3'- -GGCuGaCGUCAAGCUG--UCGG-AGUCGC- -5' |
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| 18534 | 3' | -54.9 | NC_004681.1 | + | 19351 | 0.7 | 0.623961 |
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Target: 5'- aCCGACg--AGUUCGACcgggucgaccacaccGGCCUgGGCGa -3' miRNA: 3'- -GGCUGacgUCAAGCUG---------------UCGGAgUCGC- -5' |
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| 18534 | 3' | -54.9 | NC_004681.1 | + | 41766 | 0.71 | 0.534808 |
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Target: 5'- aCCucCUGCAcgccuccagGUUCGACGGCCUUcGCGc -3' miRNA: 3'- -GGcuGACGU---------CAAGCUGUCGGAGuCGC- -5' |
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| 18534 | 3' | -54.9 | NC_004681.1 | + | 46715 | 0.72 | 0.48384 |
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Target: 5'- gCGugUGCGGggCGGgGuCCUCGGCGa -3' miRNA: 3'- gGCugACGUCaaGCUgUcGGAGUCGC- -5' |
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| 18534 | 3' | -54.9 | NC_004681.1 | + | 18375 | 0.74 | 0.398596 |
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Target: 5'- aUCGACaugGCAGgccaggCGGCGGCCgCGGCGg -3' miRNA: 3'- -GGCUGa--CGUCaa----GCUGUCGGaGUCGC- -5' |
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| 18534 | 3' | -54.9 | NC_004681.1 | + | 68555 | 0.75 | 0.347382 |
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Target: 5'- aCGACgagGuCAGccuucUUCGGCAGCCUCAGUa -3' miRNA: 3'- gGCUGa--C-GUC-----AAGCUGUCGGAGUCGc -5' |
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| 18534 | 3' | -54.9 | NC_004681.1 | + | 67309 | 0.79 | 0.206364 |
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Target: 5'- cCCGGgUGCGGUUgcCGACAGCCUCAucGCc -3' miRNA: 3'- -GGCUgACGUCAA--GCUGUCGGAGU--CGc -5' |
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| 18534 | 3' | -54.9 | NC_004681.1 | + | 73093 | 1.11 | 0.001204 |
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Target: 5'- uCCGACUGCAGUUCGACAGCCUCAGCGg -3' miRNA: 3'- -GGCUGACGUCAAGCUGUCGGAGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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