miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18534 5' -59.2 NC_004681.1 + 72095 0.67 0.536875
Target:  5'- -aUGCCUCGauuGCAGUCUucaugucaCAGCC-CAGCc -3'
miRNA:   3'- agGCGGAGC---UGUCGGA--------GUCGGaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 8526 0.67 0.536875
Target:  5'- aCCGCCcCcGCGGCCaUCGGCCagaaccccuUCGGUu -3'
miRNA:   3'- aGGCGGaGcUGUCGG-AGUCGG---------AGUCG- -5'
18534 5' -59.2 NC_004681.1 + 49390 0.67 0.526702
Target:  5'- cCCGCCUUG-CGcGCCUCGGUgUagAGCu -3'
miRNA:   3'- aGGCGGAGCuGU-CGGAGUCGgAg-UCG- -5'
18534 5' -59.2 NC_004681.1 + 15466 0.67 0.526702
Target:  5'- aUgGCgUCGGCGaacGCCUUAcCCUCGGCg -3'
miRNA:   3'- aGgCGgAGCUGU---CGGAGUcGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 10772 0.67 0.526702
Target:  5'- cCCGCCUugcacgCGACGGCCgcgggCAccgggggcGCCaggCAGCg -3'
miRNA:   3'- aGGCGGA------GCUGUCGGa----GU--------CGGa--GUCG- -5'
18534 5' -59.2 NC_004681.1 + 10374 0.67 0.526702
Target:  5'- gCCGCUUCGGCAGUgUC-GCU--GGCa -3'
miRNA:   3'- aGGCGGAGCUGUCGgAGuCGGagUCG- -5'
18534 5' -59.2 NC_004681.1 + 68562 0.67 0.525688
Target:  5'- cUUCGUCaCGACgaggucAGCCUucuucggCAGCCUCAGUa -3'
miRNA:   3'- -AGGCGGaGCUG------UCGGA-------GUCGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 73987 0.67 0.516602
Target:  5'- -aCGCCUCGACuGUCUCGuaggcauuGCUUgCAGUg -3'
miRNA:   3'- agGCGGAGCUGuCGGAGU--------CGGA-GUCG- -5'
18534 5' -59.2 NC_004681.1 + 45429 0.67 0.516602
Target:  5'- gCCGCCUCcAUGGCCgc--CCUCGGUg -3'
miRNA:   3'- aGGCGGAGcUGUCGGagucGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 47037 0.67 0.516602
Target:  5'- gUCGCCcgagUCGGCGGCCUCA-CCguaGGUa -3'
miRNA:   3'- aGGCGG----AGCUGUCGGAGUcGGag-UCG- -5'
18534 5' -59.2 NC_004681.1 + 16713 0.67 0.516602
Target:  5'- gCCGCCUCcaucGCGGCCUgCAGUUgCAGg -3'
miRNA:   3'- aGGCGGAGc---UGUCGGA-GUCGGaGUCg -5'
18534 5' -59.2 NC_004681.1 + 6498 0.67 0.516602
Target:  5'- gUCGCUUCGGC-GCCggGGCCUCcucccccucgacAGCg -3'
miRNA:   3'- aGGCGGAGCUGuCGGagUCGGAG------------UCG- -5'
18534 5' -59.2 NC_004681.1 + 41775 0.67 0.515596
Target:  5'- -aCGCCuccagguUCGACGGCCuUCGcGCCgCAGUg -3'
miRNA:   3'- agGCGG-------AGCUGUCGG-AGU-CGGaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 60166 0.67 0.496644
Target:  5'- cCCGCgucCUCGAUGGCCacggUCAGCCgguGCc -3'
miRNA:   3'- aGGCG---GAGCUGUCGG----AGUCGGaguCG- -5'
18534 5' -59.2 NC_004681.1 + 52647 0.67 0.496644
Target:  5'- cUCGUCcgCGAUAGCgUCGaaggcuGCCUCGGCc -3'
miRNA:   3'- aGGCGGa-GCUGUCGgAGU------CGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 64024 0.68 0.486795
Target:  5'- cUCC-CCU-GACAGCCUCAGuccCCUCugAGUg -3'
miRNA:   3'- -AGGcGGAgCUGUCGGAGUC---GGAG--UCG- -5'
18534 5' -59.2 NC_004681.1 + 51066 0.68 0.47704
Target:  5'- aCCuCCUCGACGGCCUgAGagaaguCCagAGCg -3'
miRNA:   3'- aGGcGGAGCUGUCGGAgUC------GGagUCG- -5'
18534 5' -59.2 NC_004681.1 + 13404 0.68 0.47704
Target:  5'- aCCGCggCGACGGCCUgGaCCgugagCAGCu -3'
miRNA:   3'- aGGCGgaGCUGUCGGAgUcGGa----GUCG- -5'
18534 5' -59.2 NC_004681.1 + 8390 0.68 0.467383
Target:  5'- gCCGuCCUUGGCGGCgUCcgcgccaccgaGGCUcuUCAGCa -3'
miRNA:   3'- aGGC-GGAGCUGUCGgAG-----------UCGG--AGUCG- -5'
18534 5' -59.2 NC_004681.1 + 14719 0.68 0.467383
Target:  5'- aCCGCCUCGGaguugcaggaAGCCUCguacacGGUCUCgaaGGCc -3'
miRNA:   3'- aGGCGGAGCUg---------UCGGAG------UCGGAG---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.