Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 14567 | 0.69 | 0.365082 |
Target: 5'- uGCUCgGCGGAgGCggCgCGCGCG-GCGu -3' miRNA: 3'- gCGAGgUGCCU-CGuaG-GCGCGCuCGU- -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 16296 | 0.69 | 0.356961 |
Target: 5'- aGCUCCcCGaGGGCAUCCcCGCG-GCc -3' miRNA: 3'- gCGAGGuGC-CUCGUAGGcGCGCuCGu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 65011 | 0.69 | 0.356961 |
Target: 5'- uGCUCCAgGcGGGCG-CCGCGgGAGa- -3' miRNA: 3'- gCGAGGUgC-CUCGUaGGCGCgCUCgu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 57983 | 0.69 | 0.356961 |
Target: 5'- cCGCUCCACGucguGAGC-UCCGCGCu---- -3' miRNA: 3'- -GCGAGGUGC----CUCGuAGGCGCGcucgu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 68357 | 0.7 | 0.340324 |
Target: 5'- aGCUCUGCGGAGCccggacaAUCUGCGUGGa-- -3' miRNA: 3'- gCGAGGUGCCUCG-------UAGGCGCGCUcgu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 15162 | 0.7 | 0.318285 |
Target: 5'- aCGCacCCGucUGGGuCAUCUGCGCGAGCAu -3' miRNA: 3'- -GCGa-GGU--GCCUcGUAGGCGCGCUCGU- -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 15766 | 0.7 | 0.310938 |
Target: 5'- uGCUCgACGucgccguuGGCGUCUGCGUGAGCc -3' miRNA: 3'- gCGAGgUGCc-------UCGUAGGCGCGCUCGu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 74034 | 0.7 | 0.303722 |
Target: 5'- uGCUCgCGCGGAuGC-UCCGUG-GAGCGg -3' miRNA: 3'- gCGAG-GUGCCU-CGuAGGCGCgCUCGU- -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 61760 | 0.71 | 0.289675 |
Target: 5'- gGcCUCCGCGGcGGCGgcuUCUGCGCGcAGCu -3' miRNA: 3'- gC-GAGGUGCC-UCGU---AGGCGCGC-UCGu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 70125 | 0.71 | 0.278809 |
Target: 5'- aGCUCCACGcuGAGC-UCCGagacgcgaaagccaGCGGGCAu -3' miRNA: 3'- gCGAGGUGC--CUCGuAGGCg-------------CGCUCGU- -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 28526 | 0.71 | 0.276144 |
Target: 5'- uGCcCCACGcGAGCuccaucUCCGCGgGAGCc -3' miRNA: 3'- gCGaGGUGC-CUCGu-----AGGCGCgCUCGu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 73117 | 0.71 | 0.26957 |
Target: 5'- aGUUCUAcucCGGGGCGUaCUGCGCaGAGCAc -3' miRNA: 3'- gCGAGGU---GCCUCGUA-GGCGCG-CUCGU- -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 71716 | 0.71 | 0.26957 |
Target: 5'- cCGCUCCGCuGAGUuccacgcUCCGCGCGuAGUc -3' miRNA: 3'- -GCGAGGUGcCUCGu------AGGCGCGC-UCGu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 74720 | 0.72 | 0.250604 |
Target: 5'- aCGCUUgcaagCACuGGAGCAUCCGgcCGCGGGUg -3' miRNA: 3'- -GCGAG-----GUG-CCUCGUAGGC--GCGCUCGu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 17716 | 0.72 | 0.244531 |
Target: 5'- aCGUgaaCGCGGGGuCGUCCGCGCccGAGCc -3' miRNA: 3'- -GCGag-GUGCCUC-GUAGGCGCG--CUCGu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 22620 | 0.72 | 0.244531 |
Target: 5'- -uCUCCACGGAcaccgcggGCAgcgCCGCGCGcaAGCAg -3' miRNA: 3'- gcGAGGUGCCU--------CGUa--GGCGCGC--UCGU- -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 73933 | 1.08 | 0.000561 |
Target: 5'- cCGCUCCACGGAGCAUCCGCGCGAGCAa -3' miRNA: 3'- -GCGAGGUGCCUCGUAGGCGCGCUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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