Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18536 | 3' | -56 | NC_004681.1 | + | 75283 | 1.07 | 0.001417 |
Target: 5'- uAGCGCUCCCAAACCCUGCACCAAGUGc -3' miRNA: 3'- -UCGCGAGGGUUUGGGACGUGGUUCAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 50657 | 0.68 | 0.610093 |
Target: 5'- aAGCGCUgCgAGACgCCUaccGCACCGGGg- -3' miRNA: 3'- -UCGCGAgGgUUUG-GGA---CGUGGUUCac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 36105 | 0.67 | 0.639419 |
Target: 5'- cGUGCUCCCAucgaaugcgcgggcAAUCUUGCGCCGc--- -3' miRNA: 3'- uCGCGAGGGU--------------UUGGGACGUGGUucac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 4067 | 0.67 | 0.66437 |
Target: 5'- gAGUGCUggcCCCAcgccAACCCcGCGCUggGUc -3' miRNA: 3'- -UCGCGA---GGGU----UUGGGaCGUGGuuCAc -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 71417 | 0.67 | 0.66437 |
Target: 5'- -aCGgUCCCAGaAUCCUGCACCAu--- -3' miRNA: 3'- ucGCgAGGGUU-UGGGACGUGGUucac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 7490 | 0.66 | 0.707317 |
Target: 5'- cGGaCGCUCCgguCGAugCCUGgGCCuGGGUGc -3' miRNA: 3'- -UC-GCGAGG---GUUugGGACgUGG-UUCAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 48212 | 0.66 | 0.717902 |
Target: 5'- aAGCGCgCCUAcaagcuGGCCCU-CGCCGAGg- -3' miRNA: 3'- -UCGCGaGGGU------UUGGGAcGUGGUUCac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 12180 | 0.66 | 0.749115 |
Target: 5'- uGGCGuCUaCCCGGACCCgGCGUCGGGc- -3' miRNA: 3'- -UCGC-GA-GGGUUUGGGaCGUGGUUCac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 16231 | 0.66 | 0.749115 |
Target: 5'- cGGCGgaaaUCCCAacGACCCgaacaaGCACCGcgaguacacGGUGg -3' miRNA: 3'- -UCGCg---AGGGU--UUGGGa-----CGUGGU---------UCAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 53312 | 0.68 | 0.588447 |
Target: 5'- uGCGCUUCCGggUCCUggaGCACUAcaAGUa -3' miRNA: 3'- uCGCGAGGGUuuGGGA---CGUGGU--UCAc -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 18199 | 0.68 | 0.588447 |
Target: 5'- gAGCGcCUCCCGGcgcACCCccgggUGUACCGGGc- -3' miRNA: 3'- -UCGC-GAGGGUU---UGGG-----ACGUGGUUCac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 29756 | 0.77 | 0.1835 |
Target: 5'- gAGCGCUUCCGcgaCCUGCuGCCAGGUGc -3' miRNA: 3'- -UCGCGAGGGUuugGGACG-UGGUUCAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 39840 | 0.7 | 0.473511 |
Target: 5'- cGCGCgcaCCGcGCCCgcgcGCGCCAAGUu -3' miRNA: 3'- uCGCGag-GGUuUGGGa---CGUGGUUCAc -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 48550 | 0.7 | 0.48354 |
Target: 5'- gAGCGCgacggcagcaCCC-AGCCCUGCugCAucGUGg -3' miRNA: 3'- -UCGCGa---------GGGuUUGGGACGugGUu-CAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 60041 | 0.7 | 0.48354 |
Target: 5'- cGGCgGCUCCCGcACCUgGCACCGGcUGa -3' miRNA: 3'- -UCG-CGAGGGUuUGGGaCGUGGUUcAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 18113 | 0.7 | 0.48354 |
Target: 5'- cGGCGC-CCCcGGCCagGCACCGGGUc -3' miRNA: 3'- -UCGCGaGGGuUUGGgaCGUGGUUCAc -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 19567 | 0.7 | 0.514212 |
Target: 5'- cAGCGCuUCCCGuuCCCcGCACCcgcGGUc -3' miRNA: 3'- -UCGCG-AGGGUuuGGGaCGUGGu--UCAc -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 66646 | 0.7 | 0.514212 |
Target: 5'- cGGCGCUCUgGGcaucgggggguACCCgagGgGCCGGGUGg -3' miRNA: 3'- -UCGCGAGGgUU-----------UGGGa--CgUGGUUCAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 3026 | 0.69 | 0.566944 |
Target: 5'- cAGCgGCaaugCCCGcACCCgcgGCGCCAAGg- -3' miRNA: 3'- -UCG-CGa---GGGUuUGGGa--CGUGGUUCac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 22407 | 0.66 | 0.728404 |
Target: 5'- gGGgGCUUaCCGGgcucACCCUGCGCCAu--- -3' miRNA: 3'- -UCgCGAG-GGUU----UGGGACGUGGUucac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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