Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18536 | 3' | -56 | NC_004681.1 | + | 66646 | 0.7 | 0.514212 |
Target: 5'- cGGCGCUCUgGGcaucgggggguACCCgagGgGCCGGGUGg -3' miRNA: 3'- -UCGCGAGGgUU-----------UGGGa--CgUGGUUCAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 19567 | 0.7 | 0.514212 |
Target: 5'- cAGCGCuUCCCGuuCCCcGCACCcgcGGUc -3' miRNA: 3'- -UCGCG-AGGGUuuGGGaCGUGGu--UCAc -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 7600 | 0.7 | 0.49367 |
Target: 5'- cGCGCaCCCAGGCCCagGCAUCGAc-- -3' miRNA: 3'- uCGCGaGGGUUUGGGa-CGUGGUUcac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 48550 | 0.7 | 0.48354 |
Target: 5'- gAGCGCgacggcagcaCCC-AGCCCUGCugCAucGUGg -3' miRNA: 3'- -UCGCGa---------GGGuUUGGGACGugGUu-CAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 60041 | 0.7 | 0.48354 |
Target: 5'- cGGCgGCUCCCGcACCUgGCACCGGcUGa -3' miRNA: 3'- -UCG-CGAGGGUuUGGGaCGUGGUUcAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 18113 | 0.7 | 0.48354 |
Target: 5'- cGGCGC-CCCcGGCCagGCACCGGGUc -3' miRNA: 3'- -UCGCGaGGGuUUGGgaCGUGGUUCAc -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 10829 | 0.7 | 0.473511 |
Target: 5'- cAGUGgUCgCGGacGCCCaGCACCAGGUGu -3' miRNA: 3'- -UCGCgAGgGUU--UGGGaCGUGGUUCAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 39840 | 0.7 | 0.473511 |
Target: 5'- cGCGCgcaCCGcGCCCgcgcGCGCCAAGUu -3' miRNA: 3'- uCGCGag-GGUuUGGGa---CGUGGUUCAc -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 67447 | 0.72 | 0.370958 |
Target: 5'- aGGCGCccgacuucuUCaCCAGGCCCUGCgacacgGCCAGGUc -3' miRNA: 3'- -UCGCG---------AG-GGUUUGGGACG------UGGUUCAc -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 44509 | 0.73 | 0.32962 |
Target: 5'- cGCGCgUCCCAcACCCUGUGgCGAGg- -3' miRNA: 3'- uCGCG-AGGGUuUGGGACGUgGUUCac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 34815 | 0.74 | 0.284633 |
Target: 5'- aAGCGCgcgggaauUCCCAAGCCC-GCACCGAa-- -3' miRNA: 3'- -UCGCG--------AGGGUUUGGGaCGUGGUUcac -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 29756 | 0.77 | 0.1835 |
Target: 5'- gAGCGCUUCCGcgaCCUGCuGCCAGGUGc -3' miRNA: 3'- -UCGCGAGGGUuugGGACG-UGGUUCAC- -5' |
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18536 | 3' | -56 | NC_004681.1 | + | 75283 | 1.07 | 0.001417 |
Target: 5'- uAGCGCUCCCAAACCCUGCACCAAGUGc -3' miRNA: 3'- -UCGCGAGGGUUUGGGACGUGGUUCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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