miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18536 5' -59.1 NC_004681.1 + 5444 0.69 0.404338
Target:  5'- uUCACCgggAGGCGUGccagcGCCUgUGCGCGCu -3'
miRNA:   3'- cGGUGG---UCUGCAC-----CGGAgACGCGUGc -5'
18536 5' -59.1 NC_004681.1 + 38918 0.7 0.395599
Target:  5'- uGCCGCCguAGGCccggaUGGUCUCggcggacuUGCGCGCGg -3'
miRNA:   3'- -CGGUGG--UCUGc----ACCGGAG--------ACGCGUGC- -5'
18536 5' -59.1 NC_004681.1 + 69620 0.7 0.390415
Target:  5'- gGCCGCCGcagcagugagcacacGGCGUGGCgcacCUC-GCGCACc -3'
miRNA:   3'- -CGGUGGU---------------CUGCACCG----GAGaCGCGUGc -5'
18536 5' -59.1 NC_004681.1 + 17635 0.7 0.386983
Target:  5'- uGCCGCCAGggaGCGUGGCCU----GCAUGu -3'
miRNA:   3'- -CGGUGGUC---UGCACCGGAgacgCGUGC- -5'
18536 5' -59.1 NC_004681.1 + 31403 0.7 0.386983
Target:  5'- aCCACCAGGCGaaugccuucgGGCUUCUGCGg--- -3'
miRNA:   3'- cGGUGGUCUGCa---------CCGGAGACGCgugc -5'
18536 5' -59.1 NC_004681.1 + 50385 0.7 0.378492
Target:  5'- gGCCGCgGGgACGUGGCCcuUCuUGCgguggGCGCGg -3'
miRNA:   3'- -CGGUGgUC-UGCACCGG--AG-ACG-----CGUGC- -5'
18536 5' -59.1 NC_004681.1 + 8233 0.71 0.330228
Target:  5'- cCCACCAGGCcgaGGUCgagGCGCACGa -3'
miRNA:   3'- cGGUGGUCUGca-CCGGagaCGCGUGC- -5'
18536 5' -59.1 NC_004681.1 + 15976 0.72 0.293591
Target:  5'- cGCCAuccccgcgguCCAGAUGcUGGCCUCcGCGUAUc -3'
miRNA:   3'- -CGGU----------GGUCUGC-ACCGGAGaCGCGUGc -5'
18536 5' -59.1 NC_004681.1 + 15756 0.72 0.279849
Target:  5'- cGCCGuuGGcgucuGCGUGaGCCUC-GCGCGCGg -3'
miRNA:   3'- -CGGUggUC-----UGCAC-CGGAGaCGCGUGC- -5'
18536 5' -59.1 NC_004681.1 + 58769 0.72 0.266624
Target:  5'- cGCCAUCAGGCagguGUGGCCcgCgGCGCAgGc -3'
miRNA:   3'- -CGGUGGUCUG----CACCGGa-GaCGCGUgC- -5'
18536 5' -59.1 NC_004681.1 + 14452 0.72 0.266624
Target:  5'- uGCgGgCGGAgGUGGCCUCgauguucuugGCGCGCa -3'
miRNA:   3'- -CGgUgGUCUgCACCGGAGa---------CGCGUGc -5'
18536 5' -59.1 NC_004681.1 + 14316 0.73 0.260203
Target:  5'- gGUCGCCgAGGCGcgGGCCaaugagCUGCGCGCc -3'
miRNA:   3'- -CGGUGG-UCUGCa-CCGGa-----GACGCGUGc -5'
18536 5' -59.1 NC_004681.1 + 26284 0.76 0.165056
Target:  5'- aCCACCGagacucauccGACGUGGCCgcaCUGCGC-CGg -3'
miRNA:   3'- cGGUGGU----------CUGCACCGGa--GACGCGuGC- -5'
18536 5' -59.1 NC_004681.1 + 61760 0.76 0.156665
Target:  5'- gGCCuCCGcGGCGgcGGCUUCUGCGCGCa -3'
miRNA:   3'- -CGGuGGU-CUGCa-CCGGAGACGCGUGc -5'
18536 5' -59.1 NC_004681.1 + 6462 0.78 0.108017
Target:  5'- cGCCAUCGGGCGUGGCgCccaagggCUGCaGCGCGg -3'
miRNA:   3'- -CGGUGGUCUGCACCG-Ga------GACG-CGUGC- -5'
18536 5' -59.1 NC_004681.1 + 75319 1.09 0.000602
Target:  5'- aGCCACCAGACGUGGCCUCUGCGCACGc -3'
miRNA:   3'- -CGGUGGUCUGCACCGGAGACGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.