Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18537 | 3' | -58.3 | NC_004681.1 | + | 6390 | 0.67 | 0.568627 |
Target: 5'- aCCGCGgcagGCCcAUGaucucGCGGCCCUCg -3' miRNA: 3'- gGGUGCa---CGGaUACgcc--UGUCGGGAG- -5' |
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18537 | 3' | -58.3 | NC_004681.1 | + | 56128 | 0.67 | 0.558231 |
Target: 5'- cUCCACGgugaagGCg-AUGCGGAgGucGCCCUCc -3' miRNA: 3'- -GGGUGCa-----CGgaUACGCCUgU--CGGGAG- -5' |
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18537 | 3' | -58.3 | NC_004681.1 | + | 28003 | 0.67 | 0.547889 |
Target: 5'- cCCCGCGUGCCgcuacUGGACGaguuggugccGCCCg- -3' miRNA: 3'- -GGGUGCACGGauac-GCCUGU----------CGGGag -5' |
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18537 | 3' | -58.3 | NC_004681.1 | + | 33441 | 0.68 | 0.527396 |
Target: 5'- gCCAgCGUGa-UGUGCGGGCGgguGCCCUg -3' miRNA: 3'- gGGU-GCACggAUACGCCUGU---CGGGAg -5' |
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18537 | 3' | -58.3 | NC_004681.1 | + | 3133 | 0.68 | 0.507194 |
Target: 5'- cCCUugGcGCCgcggGUGCGGGCAuuGCCgCUg -3' miRNA: 3'- -GGGugCaCGGa---UACGCCUGU--CGG-GAg -5' |
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18537 | 3' | -58.3 | NC_004681.1 | + | 67820 | 0.69 | 0.477535 |
Target: 5'- aCCAgGUugGCC-AUGCGGuagcgccaGCGGCCCUUg -3' miRNA: 3'- gGGUgCA--CGGaUACGCC--------UGUCGGGAG- -5' |
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18537 | 3' | -58.3 | NC_004681.1 | + | 32526 | 0.71 | 0.352209 |
Target: 5'- gCCCACGaugugcuccGCCUGcGCGGugGuGCCUUCg -3' miRNA: 3'- -GGGUGCa--------CGGAUaCGCCugU-CGGGAG- -5' |
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18537 | 3' | -58.3 | NC_004681.1 | + | 48345 | 0.72 | 0.328559 |
Target: 5'- gCCCGCGUGCCcgUAU-CGGACuGGCgagCCUCg -3' miRNA: 3'- -GGGUGCACGG--AUAcGCCUG-UCG---GGAG- -5' |
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18537 | 3' | -58.3 | NC_004681.1 | + | 450 | 0.72 | 0.306102 |
Target: 5'- cCUCGCGgauggcGCCcAUGaCGGuGCAGCCCUCg -3' miRNA: 3'- -GGGUGCa-----CGGaUAC-GCC-UGUCGGGAG- -5' |
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18537 | 3' | -58.3 | NC_004681.1 | + | 52411 | 0.73 | 0.284841 |
Target: 5'- cUCCACGUGC--AUGCGGAUgauguugucgucGGCCUUCu -3' miRNA: 3'- -GGGUGCACGgaUACGCCUG------------UCGGGAG- -5' |
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18537 | 3' | -58.3 | NC_004681.1 | + | 53143 | 0.66 | 0.652873 |
Target: 5'- gCCgCACGagGaCCUcgGCGGAguGCCUa- -3' miRNA: 3'- -GG-GUGCa-C-GGAuaCGCCUguCGGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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