miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18537 3' -58.3 NC_004681.1 + 52752 0.68 0.504192
Target:  5'- uUCACGcGCUgcauggucgaccugGCGGACAGCaCCUCg -3'
miRNA:   3'- gGGUGCaCGGaua-----------CGCCUGUCG-GGAG- -5'
18537 3' -58.3 NC_004681.1 + 44130 0.68 0.487329
Target:  5'- aCCCcCGagGCC---GCGGGCcuGGCCCUCa -3'
miRNA:   3'- -GGGuGCa-CGGauaCGCCUG--UCGGGAG- -5'
18537 3' -58.3 NC_004681.1 + 67820 0.69 0.477535
Target:  5'- aCCAgGUugGCC-AUGCGGuagcgccaGCGGCCCUUg -3'
miRNA:   3'- gGGUgCA--CGGaUACGCC--------UGUCGGGAG- -5'
18537 3' -58.3 NC_004681.1 + 3042 0.69 0.477535
Target:  5'- aCCCGCGgcgccaaggGCCUG-GUGG-CAGUCCUg -3'
miRNA:   3'- -GGGUGCa--------CGGAUaCGCCuGUCGGGAg -5'
18537 3' -58.3 NC_004681.1 + 24103 0.7 0.420965
Target:  5'- uCCgGCGccaGCCUG-GCGGAC-GCCUUCa -3'
miRNA:   3'- -GGgUGCa--CGGAUaCGCCUGuCGGGAG- -5'
18537 3' -58.3 NC_004681.1 + 32526 0.71 0.352209
Target:  5'- gCCCACGaugugcuccGCCUGcGCGGugGuGCCUUCg -3'
miRNA:   3'- -GGGUGCa--------CGGAUaCGCCugU-CGGGAG- -5'
18537 3' -58.3 NC_004681.1 + 48345 0.72 0.328559
Target:  5'- gCCCGCGUGCCcgUAU-CGGACuGGCgagCCUCg -3'
miRNA:   3'- -GGGUGCACGG--AUAcGCCUG-UCG---GGAG- -5'
18537 3' -58.3 NC_004681.1 + 450 0.72 0.306102
Target:  5'- cCUCGCGgauggcGCCcAUGaCGGuGCAGCCCUCg -3'
miRNA:   3'- -GGGUGCa-----CGGaUAC-GCC-UGUCGGGAG- -5'
18537 3' -58.3 NC_004681.1 + 52411 0.73 0.284841
Target:  5'- cUCCACGUGC--AUGCGGAUgauguugucgucGGCCUUCu -3'
miRNA:   3'- -GGGUGCACGgaUACGCCUG------------UCGGGAG- -5'
18537 3' -58.3 NC_004681.1 + 19490 0.73 0.271326
Target:  5'- gCUACGUGCauaacCUGUucaucGCGGACaAGCCCUCc -3'
miRNA:   3'- gGGUGCACG-----GAUA-----CGCCUG-UCGGGAG- -5'
18537 3' -58.3 NC_004681.1 + 75445 1.11 0.000507
Target:  5'- gCCCACGUGCCUAUGCGGACAGCCCUCg -3'
miRNA:   3'- -GGGUGCACGGAUACGCCUGUCGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.