miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18537 5' -55.9 NC_004681.1 + 10533 0.67 0.706928
Target:  5'- -cGACCGCggaauCCCGCa-GGCGGugGa -3'
miRNA:   3'- gaCUGGUGau---GGGCGagUCGUCugCg -5'
18537 5' -55.9 NC_004681.1 + 58673 0.67 0.696399
Target:  5'- -gGGCCAC-ACCUGCcugauggCGGgGGACGUg -3'
miRNA:   3'- gaCUGGUGaUGGGCGa------GUCgUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 44064 0.67 0.696399
Target:  5'- -cGGCCAUggggUACCUaCUCGGCAGGC-Ca -3'
miRNA:   3'- gaCUGGUG----AUGGGcGAGUCGUCUGcG- -5'
18537 5' -55.9 NC_004681.1 + 60632 0.67 0.696399
Target:  5'- gUGACUACccuucgGCCCGuCUCGGUcgggaAGAUGUg -3'
miRNA:   3'- gACUGGUGa-----UGGGC-GAGUCG-----UCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 73419 0.67 0.696399
Target:  5'- uUGACCcauGCUGCCaucaGUcCAGCGGACa- -3'
miRNA:   3'- gACUGG---UGAUGGg---CGaGUCGUCUGcg -5'
18537 5' -55.9 NC_004681.1 + 57670 0.67 0.68581
Target:  5'- -gGACUg--ACCCGCgCAGCGcucGACGCa -3'
miRNA:   3'- gaCUGGugaUGGGCGaGUCGU---CUGCG- -5'
18537 5' -55.9 NC_004681.1 + 59743 0.67 0.68581
Target:  5'- --cACCGCUucggacGCCCGCUU-GUGGACGUg -3'
miRNA:   3'- gacUGGUGA------UGGGCGAGuCGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 60275 0.67 0.682623
Target:  5'- cCUGGUCACUGCCCcggcgacugaugcaGCgCGGCAGugGg -3'
miRNA:   3'- -GACUGGUGAUGGG--------------CGaGUCGUCugCg -5'
18537 5' -55.9 NC_004681.1 + 15183 0.67 0.675172
Target:  5'- uCUG-CgACga-CUGgUCAGCAGACGCa -3'
miRNA:   3'- -GACuGgUGaugGGCgAGUCGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 70830 0.67 0.675172
Target:  5'- gUG-UCACggucuCCaCGCUCAGCGGcCGCa -3'
miRNA:   3'- gACuGGUGau---GG-GCGAGUCGUCuGCG- -5'
18537 5' -55.9 NC_004681.1 + 65061 0.68 0.664496
Target:  5'- -cGuacuCCACgaucCCCGCUCGGguGGuCGCc -3'
miRNA:   3'- gaCu---GGUGau--GGGCGAGUCguCU-GCG- -5'
18537 5' -55.9 NC_004681.1 + 23440 0.68 0.65379
Target:  5'- -cGGCCACU-CCCGCaguucugaUgGGuCGGGCGCc -3'
miRNA:   3'- gaCUGGUGAuGGGCG--------AgUC-GUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 7458 0.68 0.650575
Target:  5'- uCUGACCGa---CCGaCUCAGCcaggcccugcguucGGACGCu -3'
miRNA:   3'- -GACUGGUgaugGGC-GAGUCG--------------UCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 3402 0.68 0.643066
Target:  5'- uUGGCCGCggcGCCCGCgcgAGCcacGCGCg -3'
miRNA:   3'- gACUGGUGa--UGGGCGag-UCGuc-UGCG- -5'
18537 5' -55.9 NC_004681.1 + 74262 0.68 0.632333
Target:  5'- gCUGGCCACcuguugGCCCGaCUCuucgAGaCGGAgGCa -3'
miRNA:   3'- -GACUGGUGa-----UGGGC-GAG----UC-GUCUgCG- -5'
18537 5' -55.9 NC_004681.1 + 50292 0.68 0.621599
Target:  5'- -gGGCCACgucCCCGC--GGCcGACGCu -3'
miRNA:   3'- gaCUGGUGau-GGGCGagUCGuCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 31557 0.69 0.610874
Target:  5'- -gGACCGCgucuaCCGag-AGCAGACGCa -3'
miRNA:   3'- gaCUGGUGaug--GGCgagUCGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 45178 0.69 0.610874
Target:  5'- -aGACCGCggcgaggGCCuCGaccgCGGCGGAUGCu -3'
miRNA:   3'- gaCUGGUGa------UGG-GCga--GUCGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 29866 0.69 0.600166
Target:  5'- gCUGGCUGC-ACCUGg-CAGCAGGuCGCg -3'
miRNA:   3'- -GACUGGUGaUGGGCgaGUCGUCU-GCG- -5'
18537 5' -55.9 NC_004681.1 + 53631 0.69 0.589484
Target:  5'- -cGACgCGCUGgCCGUUgAGCuuGACGCc -3'
miRNA:   3'- gaCUG-GUGAUgGGCGAgUCGu-CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.