miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18538 3' -52.5 NC_004681.1 + 40003 0.67 0.860104
Target:  5'- uGCGCAgGCuggccGCGCGCugGgGGUCuCCGc -3'
miRNA:   3'- -CGUGUgUGu----CGUGCGugUgUUAG-GGU- -5'
18538 3' -52.5 NC_004681.1 + 42235 0.67 0.860103
Target:  5'- cCGCACACGGC-CGCcgaGCugcuGGUCCCGc -3'
miRNA:   3'- cGUGUGUGUCGuGCGug-UG----UUAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 36860 0.67 0.851709
Target:  5'- gGC-CugGCAGaCGCGCugGUAAUCCUg -3'
miRNA:   3'- -CGuGugUGUC-GUGCGugUGUUAGGGu -5'
18538 3' -52.5 NC_004681.1 + 8252 0.67 0.851708
Target:  5'- gGCGCACG-AGCGCGCGCAgGAgaugCUgAa -3'
miRNA:   3'- -CGUGUGUgUCGUGCGUGUgUUa---GGgU- -5'
18538 3' -52.5 NC_004681.1 + 71570 0.67 0.851708
Target:  5'- cGCGCGgACGGC-CGCaACGUAGUCCUc -3'
miRNA:   3'- -CGUGUgUGUCGuGCG-UGUGUUAGGGu -5'
18538 3' -52.5 NC_004681.1 + 52101 0.67 0.843081
Target:  5'- aGCGCACcaACAuuGCGCACAUc-UCCCGc -3'
miRNA:   3'- -CGUGUG--UGUcgUGCGUGUGuuAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 24568 0.67 0.843081
Target:  5'- uCGCACugGGUGCGCGgCAUcAUCUCGa -3'
miRNA:   3'- cGUGUGugUCGUGCGU-GUGuUAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 50648 0.68 0.825163
Target:  5'- aGC-CACAgcuuCAGCGCGCGCucagcaaccGCGAUCuCCGu -3'
miRNA:   3'- -CGuGUGU----GUCGUGCGUG---------UGUUAG-GGU- -5'
18538 3' -52.5 NC_004681.1 + 40258 0.68 0.825162
Target:  5'- cCACAC-CAGCACGaCGCACAgcaGUagCCAg -3'
miRNA:   3'- cGUGUGuGUCGUGC-GUGUGU---UAg-GGU- -5'
18538 3' -52.5 NC_004681.1 + 57891 0.68 0.815891
Target:  5'- gGCG-GCGCGGCGCGUgguCGCGGUCuCCGg -3'
miRNA:   3'- -CGUgUGUGUCGUGCGu--GUGUUAG-GGU- -5'
18538 3' -52.5 NC_004681.1 + 3427 0.68 0.81589
Target:  5'- cGCGCGCACGG-ACuaACACAAUCaCUu -3'
miRNA:   3'- -CGUGUGUGUCgUGcgUGUGUUAG-GGu -5'
18538 3' -52.5 NC_004681.1 + 16105 0.68 0.806423
Target:  5'- gGCGCGCACAGC-CGC-CACGG-CUg- -3'
miRNA:   3'- -CGUGUGUGUCGuGCGuGUGUUaGGgu -5'
18538 3' -52.5 NC_004681.1 + 73175 0.68 0.796772
Target:  5'- gGCACuC-CAGC-CGCGCACc-UCCCGg -3'
miRNA:   3'- -CGUGuGuGUCGuGCGUGUGuuAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 24775 0.68 0.796772
Target:  5'- cGCAuCGCGCucGCugGCGcCACGGaaauUCCCAu -3'
miRNA:   3'- -CGU-GUGUGu-CGugCGU-GUGUU----AGGGU- -5'
18538 3' -52.5 NC_004681.1 + 57678 0.69 0.766819
Target:  5'- --cCGCGCAGCGCuCgACGCAAUCCUc -3'
miRNA:   3'- cguGUGUGUCGUGcG-UGUGUUAGGGu -5'
18538 3' -52.5 NC_004681.1 + 55912 0.69 0.75654
Target:  5'- cGC-CGCGCAGguCGUGCGCGugCCCGc -3'
miRNA:   3'- -CGuGUGUGUCguGCGUGUGUuaGGGU- -5'
18538 3' -52.5 NC_004681.1 + 68574 0.69 0.746132
Target:  5'- gGCACGCcuggagcgACAGCGgGC-CAUAGUCCUc -3'
miRNA:   3'- -CGUGUG--------UGUCGUgCGuGUGUUAGGGu -5'
18538 3' -52.5 NC_004681.1 + 16422 0.69 0.735607
Target:  5'- uGCGC-UACGGCugGCugAUGA-CCCAu -3'
miRNA:   3'- -CGUGuGUGUCGugCGugUGUUaGGGU- -5'
18538 3' -52.5 NC_004681.1 + 11859 0.7 0.714254
Target:  5'- gGCAguCGCGGCGCGCGCAgCGua-CCGa -3'
miRNA:   3'- -CGUguGUGUCGUGCGUGU-GUuagGGU- -5'
18538 3' -52.5 NC_004681.1 + 22632 0.7 0.692573
Target:  5'- cCGCGgGCAGCGcCGCGCGCAAgcagaucgCCUAc -3'
miRNA:   3'- cGUGUgUGUCGU-GCGUGUGUUa-------GGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.