miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18538 5' -52.5 NC_004681.1 + 22265 0.66 0.8964
Target:  5'- -gUGCucacUCCGCGUgGCGgcgugggcgcccUGCCCGuCAUGg -3'
miRNA:   3'- gaACGu---AGGCGUA-CGU------------AUGGGC-GUAC- -5'
18538 5' -52.5 NC_004681.1 + 70850 0.66 0.889158
Target:  5'- --aGCggCCGCA-GCAUGCCCuCAg- -3'
miRNA:   3'- gaaCGuaGGCGUaCGUAUGGGcGUac -5'
18538 5' -52.5 NC_004681.1 + 30860 0.66 0.873876
Target:  5'- --gGCAcgCCGCccGCcgACCCGC-UGg -3'
miRNA:   3'- gaaCGUa-GGCGuaCGuaUGGGCGuAC- -5'
18538 5' -52.5 NC_004681.1 + 19663 0.67 0.849055
Target:  5'- --gGCAUCCGUAUGCA-GCUgGUcgGc -3'
miRNA:   3'- gaaCGUAGGCGUACGUaUGGgCGuaC- -5'
18538 5' -52.5 NC_004681.1 + 72461 0.67 0.840305
Target:  5'- --aGCAUCCGCAaaccuUGCAguCCgCGCAa- -3'
miRNA:   3'- gaaCGUAGGCGU-----ACGUauGG-GCGUac -5'
18538 5' -52.5 NC_004681.1 + 75667 0.68 0.822142
Target:  5'- -aUGCAggUgGCAuUGCAUACCCauGCAUGc -3'
miRNA:   3'- gaACGUa-GgCGU-ACGUAUGGG--CGUAC- -5'
18538 5' -52.5 NC_004681.1 + 16793 0.68 0.81275
Target:  5'- --gGCAUCC-CcgGCAUGCCCGa--- -3'
miRNA:   3'- gaaCGUAGGcGuaCGUAUGGGCguac -5'
18538 5' -52.5 NC_004681.1 + 33672 0.68 0.81275
Target:  5'- --gGCGaaccUCCGCGcGCGUGaCCGCAUGu -3'
miRNA:   3'- gaaCGU----AGGCGUaCGUAUgGGCGUAC- -5'
18538 5' -52.5 NC_004681.1 + 49196 0.68 0.803163
Target:  5'- --cGCAgUUGCGUGCGgaggaUGCCCGCGUc -3'
miRNA:   3'- gaaCGUaGGCGUACGU-----AUGGGCGUAc -5'
18538 5' -52.5 NC_004681.1 + 73363 0.69 0.742196
Target:  5'- aUUGCcUCCGUagGCAUGagCGCAUGg -3'
miRNA:   3'- gAACGuAGGCGuaCGUAUggGCGUAC- -5'
18538 5' -52.5 NC_004681.1 + 24775 0.69 0.735832
Target:  5'- --cGCAUCgCGCucgcugGCGccacggaaauucccaUGCCCGCAUGg -3'
miRNA:   3'- gaaCGUAG-GCGua----CGU---------------AUGGGCGUAC- -5'
18538 5' -52.5 NC_004681.1 + 62093 0.69 0.735832
Target:  5'- --aGUAggCCGCgaucuggucgaacagGUGCAUGCCCGCgAUGa -3'
miRNA:   3'- gaaCGUa-GGCG---------------UACGUAUGGGCG-UAC- -5'
18538 5' -52.5 NC_004681.1 + 17912 0.71 0.631617
Target:  5'- cCUUGCGcggCCGCcgcguugAUGUcgGCCUGCGUGg -3'
miRNA:   3'- -GAACGUa--GGCG-------UACGuaUGGGCGUAC- -5'
18538 5' -52.5 NC_004681.1 + 75624 1.08 0.002741
Target:  5'- cCUUGCAUCCGCAUGCAUACCCGCAUGc -3'
miRNA:   3'- -GAACGUAGGCGUACGUAUGGGCGUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.