miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18539 5' -55.1 NC_004682.1 + 39717 0.66 0.694789
Target:  5'- --gUACCGCUGCGGGUAgaacCcGaGCAGu -3'
miRNA:   3'- aguGUGGUGACGCCCAUa---GaC-CGUCu -5'
18539 5' -55.1 NC_004682.1 + 15044 0.66 0.694789
Target:  5'- uUCGCugCGCUGCcGGU-UCgGGCAa- -3'
miRNA:   3'- -AGUGugGUGACGcCCAuAGaCCGUcu -5'
18539 5' -55.1 NC_004682.1 + 15163 0.67 0.605798
Target:  5'- -gACGCCAcCUGUGGGcAUCaGGCGuGAa -3'
miRNA:   3'- agUGUGGU-GACGCCCaUAGaCCGU-CU- -5'
18539 5' -55.1 NC_004682.1 + 50640 1.09 0.000839
Target:  5'- gUCACACCACUGCGGGUAUCUGGCAGAc -3'
miRNA:   3'- -AGUGUGGUGACGCCCAUAGACCGUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.