miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18540 3' -56.3 NC_004682.1 + 46482 0.66 0.681766
Target:  5'- gCUCACGG-UCUgggcgaAGCCUGCGauccaggCGCGGc -3'
miRNA:   3'- aGAGUGUCuAGG------UCGGGCGCa------GUGCC- -5'
18540 3' -56.3 NC_004682.1 + 25608 0.66 0.681766
Target:  5'- cCUUGCcGGucUCCGGCUCGCGccgUACGGu -3'
miRNA:   3'- aGAGUGuCU--AGGUCGGGCGCa--GUGCC- -5'
18540 3' -56.3 NC_004682.1 + 40437 0.66 0.660095
Target:  5'- cUCUCGuugGGGUCCAGCuCCGgGUgGUGGa -3'
miRNA:   3'- -AGAGUg--UCUAGGUCG-GGCgCAgUGCC- -5'
18540 3' -56.3 NC_004682.1 + 46926 0.67 0.616525
Target:  5'- --cUACAGAUCaaugaGGCCCGcCGaaGCGGg -3'
miRNA:   3'- agaGUGUCUAGg----UCGGGC-GCagUGCC- -5'
18540 3' -56.3 NC_004682.1 + 8856 0.67 0.594782
Target:  5'- -gUCcgAGcgCCGGCCCgacgccguagGCGUCACGGu -3'
miRNA:   3'- agAGugUCuaGGUCGGG----------CGCAGUGCC- -5'
18540 3' -56.3 NC_004682.1 + 41549 0.68 0.541108
Target:  5'- cCUCGCGGuUCCAGaugaCCGUGUUguuCGGc -3'
miRNA:   3'- aGAGUGUCuAGGUCg---GGCGCAGu--GCC- -5'
18540 3' -56.3 NC_004682.1 + 26249 0.68 0.520073
Target:  5'- gUCggagCACGacaCCAGCaCCGCGuUCGCGGg -3'
miRNA:   3'- -AGa---GUGUcuaGGUCG-GGCGC-AGUGCC- -5'
18540 3' -56.3 NC_004682.1 + 39596 0.69 0.449324
Target:  5'- cUUCACGaccUCAGCCCGCGUaGCGGu -3'
miRNA:   3'- aGAGUGUcuaGGUCGGGCGCAgUGCC- -5'
18540 3' -56.3 NC_004682.1 + 50230 1.11 0.000548
Target:  5'- aUCUCACAGAUCCAGCCCGCGUCACGGa -3'
miRNA:   3'- -AGAGUGUCUAGGUCGGGCGCAGUGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.