miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18542 5' -55.5 NC_004682.1 + 26127 0.66 0.687807
Target:  5'- gCUGCCGuacuGCUccaGGAAGAGCU-GCUCCAg -3'
miRNA:   3'- -GAUGGCu---CGG---CUUUCUUGGuCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 26276 0.67 0.5772
Target:  5'- aCUGCUGGGCaaGAGAGGcuCCacaGGCCCCGc -3'
miRNA:   3'- -GAUGGCUCGg-CUUUCUu-GG---UCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 26289 0.69 0.500834
Target:  5'- uUGCCgccguucgacguaGAGCUGAugAAGccCCAGCCCCGg -3'
miRNA:   3'- gAUGG-------------CUCGGCU--UUCuuGGUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 26403 0.72 0.316104
Target:  5'- -cGCCGGGUCGAAcgucggcGGGGCCAGCCg-- -3'
miRNA:   3'- gaUGGCUCGGCUU-------UCUUGGUCGGggu -5'
18542 5' -55.5 NC_004682.1 + 27452 0.7 0.410188
Target:  5'- gUGCCGAGCCagccuucaAGCuCGGCCCCAg -3'
miRNA:   3'- gAUGGCUCGGcuuuc---UUG-GUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 27905 0.67 0.610323
Target:  5'- aUGCUGAGgCGAAGGGu---GCCCCGc -3'
miRNA:   3'- gAUGGCUCgGCUUUCUugguCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 28787 0.67 0.599251
Target:  5'- -gGCCGucaGGCCGAGAGcggacagggcGAUCAGUCCUg -3'
miRNA:   3'- gaUGGC---UCGGCUUUC----------UUGGUCGGGGu -5'
18542 5' -55.5 NC_004682.1 + 33097 0.67 0.5772
Target:  5'- uUGCCGAGCUGAgcGAaguucucgACCAGgCCgGg -3'
miRNA:   3'- gAUGGCUCGGCUuuCU--------UGGUCgGGgU- -5'
18542 5' -55.5 NC_004682.1 + 33232 0.71 0.366662
Target:  5'- -gGCCaGGCCGAAAc--CCAGCCCCc -3'
miRNA:   3'- gaUGGcUCGGCUUUcuuGGUCGGGGu -5'
18542 5' -55.5 NC_004682.1 + 33998 0.69 0.481126
Target:  5'- -cACCaGGCCGAuggcGGGugCAGCCgCCAc -3'
miRNA:   3'- gaUGGcUCGGCUu---UCUugGUCGG-GGU- -5'
18542 5' -55.5 NC_004682.1 + 34487 0.69 0.491453
Target:  5'- -gGCC-AGUCGAccgucguuGAGGGCgCGGCCCCAg -3'
miRNA:   3'- gaUGGcUCGGCU--------UUCUUG-GUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 35529 0.72 0.332082
Target:  5'- -gACCGGGCCGuagucgauGAACCgguugcuguaguuGGCCCCGa -3'
miRNA:   3'- gaUGGCUCGGCuuu-----CUUGG-------------UCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 36244 0.67 0.588207
Target:  5'- gUACUGAGCgGgcAGGACCGgagcgucguuGUCCCAc -3'
miRNA:   3'- gAUGGCUCGgCuuUCUUGGU----------CGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 37252 0.66 0.675711
Target:  5'- aUGCCGccacgguGGCCGugGGuggucAACCAGCCCg- -3'
miRNA:   3'- gAUGGC-------UCGGCuuUC-----UUGGUCGGGgu -5'
18542 5' -55.5 NC_004682.1 + 38187 0.72 0.324819
Target:  5'- cCUACgGAGUCGAcagAAGGACCgggggcucuaGGCCCCc -3'
miRNA:   3'- -GAUGgCUCGGCU---UUCUUGG----------UCGGGGu -5'
18542 5' -55.5 NC_004682.1 + 40122 0.69 0.470906
Target:  5'- gCUGCCGAGUCGucaucGAGGucuagGCCggcguugguGGCCCCGa -3'
miRNA:   3'- -GAUGGCUCGGCu----UUCU-----UGG---------UCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 41873 0.72 0.324819
Target:  5'- -cGCCGAGCCGGAAGccCUcaAGCUCCu -3'
miRNA:   3'- gaUGGCUCGGCUUUCuuGG--UCGGGGu -5'
18542 5' -55.5 NC_004682.1 + 42298 0.67 0.592621
Target:  5'- gCUGCCGAcucauGCggaccuuccucggugCGguAGAGCCAGCUCCGc -3'
miRNA:   3'- -GAUGGCU-----CG---------------GCuuUCUUGGUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 43706 0.66 0.68671
Target:  5'- -aGCCGAGCgucuucuCGGGcAGGuACCAGCCgCCGu -3'
miRNA:   3'- gaUGGCUCG-------GCUU-UCU-UGGUCGG-GGU- -5'
18542 5' -55.5 NC_004682.1 + 44095 0.71 0.366662
Target:  5'- cCUGCCuccGUCGGGAGGAUCGGCCCg- -3'
miRNA:   3'- -GAUGGcu-CGGCUUUCUUGGUCGGGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.