miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18545 5' -61.8 NC_004682.1 + 48887 0.67 0.339914
Target:  5'- gCCAGCGaUCCaGaUCCGccaucGGGGACCGa -3'
miRNA:   3'- -GGUCGCgAGGaCcAGGU-----CCCCUGGCa -5'
18545 5' -61.8 NC_004682.1 + 50463 0.68 0.281151
Target:  5'- -gAGCGCUCCgGGcgcUCCcggAGGGGAgCCGc -3'
miRNA:   3'- ggUCGCGAGGaCC---AGG---UCCCCU-GGCa -5'
18545 5' -61.8 NC_004682.1 + 41946 0.68 0.274401
Target:  5'- gCgAGCaGCUUCUGcaucugCUGGGGGACCGUg -3'
miRNA:   3'- -GgUCG-CGAGGACca----GGUCCCCUGGCA- -5'
18545 5' -61.8 NC_004682.1 + 22438 0.72 0.152677
Target:  5'- aCGGCGCUCCUGcgggccGUCCAGGGuGCaGUa -3'
miRNA:   3'- gGUCGCGAGGAC------CAGGUCCCcUGgCA- -5'
18545 5' -61.8 NC_004682.1 + 2634 0.72 0.141007
Target:  5'- gCCGGCG-UCCUGGUCgAGacauGGGACCa- -3'
miRNA:   3'- -GGUCGCgAGGACCAGgUC----CCCUGGca -5'
18545 5' -61.8 NC_004682.1 + 22984 0.77 0.069492
Target:  5'- gCUGGC-CUUcgggCUGGUCCGGGGGGCCGUc -3'
miRNA:   3'- -GGUCGcGAG----GACCAGGUCCCCUGGCA- -5'
18545 5' -61.8 NC_004682.1 + 45538 1.07 0.000298
Target:  5'- uCCAGCGCUCCUGGUCCAGGGGACCGUu -3'
miRNA:   3'- -GGUCGCGAGGACCAGGUCCCCUGGCA- -5'
18545 5' -61.8 NC_004682.1 + 21912 0.72 0.160515
Target:  5'- gUCAGCGUUCCUGGcgaCCAGGGccaagaucugggaGACCa- -3'
miRNA:   3'- -GGUCGCGAGGACCa--GGUCCC-------------CUGGca -5'
18545 5' -61.8 NC_004682.1 + 43146 0.69 0.254928
Target:  5'- gCCA-CGCUCC-GGUCCAGGcGGucgucCCGg -3'
miRNA:   3'- -GGUcGCGAGGaCCAGGUCC-CCu----GGCa -5'
18545 5' -61.8 NC_004682.1 + 25650 0.68 0.288033
Target:  5'- cCgGGCGCUCCacuggGGUCCGGGuaccaACCGg -3'
miRNA:   3'- -GgUCGCGAGGa----CCAGGUCCcc---UGGCa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.