miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18546 5' -54.1 NC_004682.1 + 18888 0.66 0.799022
Target:  5'- -aUGGCGAGCugGgacUCGcuGGUCGaGUCGg -3'
miRNA:   3'- gaACUGCUUGugC---AGCc-CCAGC-CAGU- -5'
18546 5' -54.1 NC_004682.1 + 10373 0.66 0.799022
Target:  5'- -aUGACGggUuccgaGUCGGGGUCucgcaGGUa- -3'
miRNA:   3'- gaACUGCuuGug---CAGCCCCAG-----CCAgu -5'
18546 5' -54.1 NC_004682.1 + 24517 0.66 0.789272
Target:  5'- --aGACGuACAcCGccaacccaaugcUCGGGGUCGGcCAc -3'
miRNA:   3'- gaaCUGCuUGU-GC------------AGCCCCAGCCaGU- -5'
18546 5' -54.1 NC_004682.1 + 43222 0.66 0.789272
Target:  5'- -aUGACGA--ACGUCGGG--CGGUUAc -3'
miRNA:   3'- gaACUGCUugUGCAGCCCcaGCCAGU- -5'
18546 5' -54.1 NC_004682.1 + 42143 0.66 0.779359
Target:  5'- --cGAUGAGCGCGUCGuGGaUCGcUCGg -3'
miRNA:   3'- gaaCUGCUUGUGCAGC-CCcAGCcAGU- -5'
18546 5' -54.1 NC_004682.1 + 36904 0.66 0.769292
Target:  5'- gUUGAUGAACGaGUCGacaucgcucGGGUgaCGGUCAc -3'
miRNA:   3'- gAACUGCUUGUgCAGC---------CCCA--GCCAGU- -5'
18546 5' -54.1 NC_004682.1 + 10558 0.66 0.759084
Target:  5'- -aUGGCaGGACGCcgacagaucaUCGGGG-CGGUCAa -3'
miRNA:   3'- gaACUG-CUUGUGc---------AGCCCCaGCCAGU- -5'
18546 5' -54.1 NC_004682.1 + 38049 0.68 0.6955
Target:  5'- --cGAC-AGCGCGUUcaGuGGGUCGGUCc -3'
miRNA:   3'- gaaCUGcUUGUGCAG--C-CCCAGCCAGu -5'
18546 5' -54.1 NC_004682.1 + 43111 0.69 0.607656
Target:  5'- --cGACGGGCAC--CGGGGaucUUGGUCAg -3'
miRNA:   3'- gaaCUGCUUGUGcaGCCCC---AGCCAGU- -5'
18546 5' -54.1 NC_004682.1 + 42460 0.69 0.58571
Target:  5'- --gGAUGAACugGcuggcCGGGGUCGGcCu -3'
miRNA:   3'- gaaCUGCUUGugCa----GCCCCAGCCaGu -5'
18546 5' -54.1 NC_004682.1 + 35410 0.7 0.530602
Target:  5'- -aUGACGAagGCACcggcccaGUCGGGGUCGuacuccGUCGa -3'
miRNA:   3'- gaACUGCU--UGUG-------CAGCCCCAGC------CAGU- -5'
18546 5' -54.1 NC_004682.1 + 49261 0.71 0.500103
Target:  5'- --cGAUccggGAugGCGUCGGcGUCGGUCGa -3'
miRNA:   3'- gaaCUG----CUugUGCAGCCcCAGCCAGU- -5'
18546 5' -54.1 NC_004682.1 + 31285 0.72 0.459376
Target:  5'- --cGAguaGAGCugGUaguaGGGGUUGGUCAg -3'
miRNA:   3'- gaaCUg--CUUGugCAg---CCCCAGCCAGU- -5'
18546 5' -54.1 NC_004682.1 + 30391 0.72 0.459376
Target:  5'- gCUUGGCGcucagccgcuGCACGcCGGGGUaggccCGGUCGa -3'
miRNA:   3'- -GAACUGCu---------UGUGCaGCCCCA-----GCCAGU- -5'
18546 5' -54.1 NC_004682.1 + 45427 1.08 0.001628
Target:  5'- uCUUGACGAACACGUCGGGGUCGGUCAc -3'
miRNA:   3'- -GAACUGCUUGUGCAGCCCCAGCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.