miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18547 5' -55.3 NC_004682.1 + 41817 0.66 0.709794
Target:  5'- cUCGCGccAGCAGCGCGUaggUCagGACGaagGCUg -3'
miRNA:   3'- cAGCGC--UCGUUGCGCG---AG--CUGCa--UGA- -5'
18547 5' -55.3 NC_004682.1 + 16195 0.66 0.708714
Target:  5'- -aCGCGAGguGCuggaucgcaaccgGCGCaUCGGCGUGg- -3'
miRNA:   3'- caGCGCUCguUG-------------CGCG-AGCUGCAUga -5'
18547 5' -55.3 NC_004682.1 + 35207 0.67 0.65512
Target:  5'- --gGCGGGCGA-GCGCUCGGCu---- -3'
miRNA:   3'- cagCGCUCGUUgCGCGAGCUGcauga -5'
18547 5' -55.3 NC_004682.1 + 27877 0.67 0.65512
Target:  5'- -aCGCGAGCGccaggggaGCaGCGa-CGACGUACa -3'
miRNA:   3'- caGCGCUCGU--------UG-CGCgaGCUGCAUGa -5'
18547 5' -55.3 NC_004682.1 + 41936 0.67 0.65181
Target:  5'- -cCGUGGGCAGCGgGUcaccggcagagcccUUGAUGUACa -3'
miRNA:   3'- caGCGCUCGUUGCgCG--------------AGCUGCAUGa -5'
18547 5' -55.3 NC_004682.1 + 17522 0.67 0.641868
Target:  5'- cUCGgGccugaucGGCAACGUGCUCGGCucacuggGUACg -3'
miRNA:   3'- cAGCgC-------UCGUUGCGCGAGCUG-------CAUGa -5'
18547 5' -55.3 NC_004682.1 + 10582 0.67 0.633025
Target:  5'- -aCGCu-GCGA-GCGCUCGACGcACUg -3'
miRNA:   3'- caGCGcuCGUUgCGCGAGCUGCaUGA- -5'
18547 5' -55.3 NC_004682.1 + 45899 0.67 0.621971
Target:  5'- -gCGCGAGUAGCGCacucggGCUCGcCGU-Cg -3'
miRNA:   3'- caGCGCUCGUUGCG------CGAGCuGCAuGa -5'
18547 5' -55.3 NC_004682.1 + 39661 0.68 0.567021
Target:  5'- --aGCGGGCGGCuucugaGCGgaguccCUCGACGUACUc -3'
miRNA:   3'- cagCGCUCGUUG------CGC------GAGCUGCAUGA- -5'
18547 5' -55.3 NC_004682.1 + 11380 0.68 0.556157
Target:  5'- aUCcCGAGCGaagACGUGCUCGAUGU-Cg -3'
miRNA:   3'- cAGcGCUCGU---UGCGCGAGCUGCAuGa -5'
18547 5' -55.3 NC_004682.1 + 9393 0.68 0.556157
Target:  5'- gGUCGaCGAGCGccuGCGUGgUCGGCcUGCa -3'
miRNA:   3'- -CAGC-GCUCGU---UGCGCgAGCUGcAUGa -5'
18547 5' -55.3 NC_004682.1 + 13627 0.68 0.545355
Target:  5'- -aCGCGGGCAGCacgGCcCUCGGCGcgGCg -3'
miRNA:   3'- caGCGCUCGUUG---CGcGAGCUGCa-UGa -5'
18547 5' -55.3 NC_004682.1 + 37724 0.69 0.523962
Target:  5'- cUCGaCGGGCuccucguaGAUGCGCUCGACGcagccUGCg -3'
miRNA:   3'- cAGC-GCUCG--------UUGCGCGAGCUGC-----AUGa -5'
18547 5' -55.3 NC_004682.1 + 40689 0.69 0.502898
Target:  5'- gGUUGCGGaugacccCGGCGCGCUUGcCGUGCUc -3'
miRNA:   3'- -CAGCGCUc------GUUGCGCGAGCuGCAUGA- -5'
18547 5' -55.3 NC_004682.1 + 4936 0.69 0.502898
Target:  5'- cGUCGCGuGCAugG-GCUaCGACG-ACa -3'
miRNA:   3'- -CAGCGCuCGUugCgCGA-GCUGCaUGa -5'
18547 5' -55.3 NC_004682.1 + 12956 0.69 0.502898
Target:  5'- uUCGCGGacaucGCGGCGCGUucUCGGgGUACc -3'
miRNA:   3'- cAGCGCU-----CGUUGCGCG--AGCUgCAUGa -5'
18547 5' -55.3 NC_004682.1 + 45768 0.69 0.492504
Target:  5'- -gCGgGAGCAGCcgGUGCggcgUCGGCGUACg -3'
miRNA:   3'- caGCgCUCGUUG--CGCG----AGCUGCAUGa -5'
18547 5' -55.3 NC_004682.1 + 2963 0.69 0.492504
Target:  5'- -gCGCGGGCGGCgGCGCUgGGCaGUGg- -3'
miRNA:   3'- caGCGCUCGUUG-CGCGAgCUG-CAUga -5'
18547 5' -55.3 NC_004682.1 + 6365 0.69 0.482211
Target:  5'- -gCGCGGGCG--GUGCUCGACaaGUACa -3'
miRNA:   3'- caGCGCUCGUugCGCGAGCUG--CAUGa -5'
18547 5' -55.3 NC_004682.1 + 5918 0.7 0.45198
Target:  5'- aGUCGUGGGCGuuccaGCaGCUCGACGgcaaggGCg -3'
miRNA:   3'- -CAGCGCUCGUug---CG-CGAGCUGCa-----UGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.