miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18548 5' -53.1 NC_004682.1 + 8946 0.66 0.813202
Target:  5'- --cGACGccauCGCAGCgCGCCAGg--- -3'
miRNA:   3'- gaaCUGCau--GCGUCGgGUGGUCaagu -5'
18548 5' -53.1 NC_004682.1 + 27565 0.66 0.80348
Target:  5'- -cUGGCGcUGCgGCAGagCCGCUGGUUCGc -3'
miRNA:   3'- gaACUGC-AUG-CGUCg-GGUGGUCAAGU- -5'
18548 5' -53.1 NC_004682.1 + 47697 0.66 0.80348
Target:  5'- gUUGGCGgcugcUGCGCcGCCUgcGCCAGUgaUCGa -3'
miRNA:   3'- gAACUGC-----AUGCGuCGGG--UGGUCA--AGU- -5'
18548 5' -53.1 NC_004682.1 + 45790 0.66 0.783482
Target:  5'- --cGGCGUACGCguAGCCCuucgGCgGGaUCAg -3'
miRNA:   3'- gaaCUGCAUGCG--UCGGG----UGgUCaAGU- -5'
18548 5' -53.1 NC_004682.1 + 7860 0.66 0.783482
Target:  5'- --gGGCGaGCGCGGCagauuCCGGUUCGu -3'
miRNA:   3'- gaaCUGCaUGCGUCGggu--GGUCAAGU- -5'
18548 5' -53.1 NC_004682.1 + 41761 0.67 0.741596
Target:  5'- -gUGAUGUACGacCGGCCaugCACCAGggagUCGg -3'
miRNA:   3'- gaACUGCAUGC--GUCGG---GUGGUCa---AGU- -5'
18548 5' -53.1 NC_004682.1 + 43428 0.67 0.730802
Target:  5'- -gUGGCGUG-GCuuGCCCACCGGa--- -3'
miRNA:   3'- gaACUGCAUgCGu-CGGGUGGUCaagu -5'
18548 5' -53.1 NC_004682.1 + 26488 0.68 0.696736
Target:  5'- aCUUGACGccgucgaccACGCAGCCCAgcucugcCCGGaagUCGa -3'
miRNA:   3'- -GAACUGCa--------UGCGUCGGGU-------GGUCa--AGU- -5'
18548 5' -53.1 NC_004682.1 + 30134 0.68 0.67552
Target:  5'- -aUGACGUuccgcuuguCGCGGCCCuugaAGUUCAu -3'
miRNA:   3'- gaACUGCAu--------GCGUCGGGugg-UCAAGU- -5'
18548 5' -53.1 NC_004682.1 + 9600 0.68 0.65302
Target:  5'- -cUGGCGUucgaggaccACGaauccaaGGCCCAgCAGUUCAg -3'
miRNA:   3'- gaACUGCA---------UGCg------UCGGGUgGUCAAGU- -5'
18548 5' -53.1 NC_004682.1 + 14376 0.68 0.65302
Target:  5'- --aGGCGUACGCGGaCgCGCUAGUgaagCGa -3'
miRNA:   3'- gaaCUGCAUGCGUC-GgGUGGUCAa---GU- -5'
18548 5' -53.1 NC_004682.1 + 45647 0.69 0.630439
Target:  5'- --cGACGaACGCuGCCCACgGGUg-- -3'
miRNA:   3'- gaaCUGCaUGCGuCGGGUGgUCAagu -5'
18548 5' -53.1 NC_004682.1 + 10077 0.76 0.252833
Target:  5'- --gGGCGUGgGguGCCCGCCAG-UCGg -3'
miRNA:   3'- gaaCUGCAUgCguCGGGUGGUCaAGU- -5'
18548 5' -53.1 NC_004682.1 + 43670 1.09 0.001436
Target:  5'- uCUUGACGUACGCAGCCCACCAGUUCAg -3'
miRNA:   3'- -GAACUGCAUGCGUCGGGUGGUCAAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.