miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18549 5' -54.7 NC_004682.1 + 45723 0.66 0.745248
Target:  5'- cGCGcCAGGAUCggcgcggCGUCGACCacGGgGGu -3'
miRNA:   3'- cUGUaGUCCUAGa------GCAGCUGG--CCgUC- -5'
18549 5' -54.7 NC_004682.1 + 36034 0.66 0.745248
Target:  5'- aGCGUCAGGua---GUCGACCGGa-- -3'
miRNA:   3'- cUGUAGUCCuagagCAGCUGGCCguc -5'
18549 5' -54.7 NC_004682.1 + 22873 0.66 0.734693
Target:  5'- uGGCAUCAuGGccgUCGUCGGCCuGGUGGc -3'
miRNA:   3'- -CUGUAGU-CCuagAGCAGCUGG-CCGUC- -5'
18549 5' -54.7 NC_004682.1 + 42949 0.66 0.734693
Target:  5'- uGCGagGGGAUCUCGgaGACCGGgGu -3'
miRNA:   3'- cUGUagUCCUAGAGCagCUGGCCgUc -5'
18549 5' -54.7 NC_004682.1 + 34373 0.66 0.733631
Target:  5'- -uCGUCGGcGcAUCUCGUUGACCgacuugaGGUAGg -3'
miRNA:   3'- cuGUAGUC-C-UAGAGCAGCUGG-------CCGUC- -5'
18549 5' -54.7 NC_004682.1 + 36339 0.66 0.724033
Target:  5'- -uUAUCAGGAUCUCGgugggCGAaccCCGaGCuGg -3'
miRNA:   3'- cuGUAGUCCUAGAGCa----GCU---GGC-CGuC- -5'
18549 5' -54.7 NC_004682.1 + 35207 0.66 0.717592
Target:  5'- cGC-UCAGGAUCUCGcacacgUCGAUcaacauccgagccaaCGGCAGc -3'
miRNA:   3'- cUGuAGUCCUAGAGC------AGCUG---------------GCCGUC- -5'
18549 5' -54.7 NC_004682.1 + 13190 0.67 0.691545
Target:  5'- cGACAcgCAG-AUCcCGUuccaCGACCGGCGGg -3'
miRNA:   3'- -CUGUa-GUCcUAGaGCA----GCUGGCCGUC- -5'
18549 5' -54.7 NC_004682.1 + 31371 0.67 0.691545
Target:  5'- -cCAUCAGGGUCUUGaCGuucUCGGCGa -3'
miRNA:   3'- cuGUAGUCCUAGAGCaGCu--GGCCGUc -5'
18549 5' -54.7 NC_004682.1 + 13695 0.67 0.658533
Target:  5'- cGGC-UgGGGAUCUCGUCGcACacguucggcuaCGGCGGc -3'
miRNA:   3'- -CUGuAgUCCUAGAGCAGC-UG-----------GCCGUC- -5'
18549 5' -54.7 NC_004682.1 + 14313 0.68 0.636382
Target:  5'- gGGCGUgAGGGUCUCGUUgaGACCGa--- -3'
miRNA:   3'- -CUGUAgUCCUAGAGCAG--CUGGCcguc -5'
18549 5' -54.7 NC_004682.1 + 18820 0.68 0.625295
Target:  5'- cGAC--CAGG-UCUcCG-CGACCGGCAGu -3'
miRNA:   3'- -CUGuaGUCCuAGA-GCaGCUGGCCGUC- -5'
18549 5' -54.7 NC_004682.1 + 42258 0.68 0.60315
Target:  5'- uGGCGUCGuagguaguuGGAUgUCGUCGugCGuuGCAGa -3'
miRNA:   3'- -CUGUAGU---------CCUAgAGCAGCugGC--CGUC- -5'
18549 5' -54.7 NC_004682.1 + 33192 0.68 0.592111
Target:  5'- gGGCGUCAGGAUgUUGcCGAgCGucuGCAGg -3'
miRNA:   3'- -CUGUAGUCCUAgAGCaGCUgGC---CGUC- -5'
18549 5' -54.7 NC_004682.1 + 41746 0.69 0.548382
Target:  5'- --gGUCAGGAUCgacagCGACCGGgAGa -3'
miRNA:   3'- cugUAGUCCUAGagca-GCUGGCCgUC- -5'
18549 5' -54.7 NC_004682.1 + 18922 0.69 0.537597
Target:  5'- cGAUGUCGGGAUCUCcggCGA-CGGCGc -3'
miRNA:   3'- -CUGUAGUCCUAGAGca-GCUgGCCGUc -5'
18549 5' -54.7 NC_004682.1 + 20263 0.72 0.361334
Target:  5'- cGCGUguGGAgcaggUCUCGUCGGagaaCGGCAGc -3'
miRNA:   3'- cUGUAguCCU-----AGAGCAGCUg---GCCGUC- -5'
18549 5' -54.7 NC_004682.1 + 34291 0.73 0.327971
Target:  5'- -cCGUCAGGGUCUUGUCcuGCUGGCGc -3'
miRNA:   3'- cuGUAGUCCUAGAGCAGc-UGGCCGUc -5'
18549 5' -54.7 NC_004682.1 + 41448 0.73 0.319994
Target:  5'- cGACcacgCAGGcgCUCGUCGACCGcGCc- -3'
miRNA:   3'- -CUGua--GUCCuaGAGCAGCUGGC-CGuc -5'
18549 5' -54.7 NC_004682.1 + 30185 0.85 0.054503
Target:  5'- cGACGcCAGGAUCUCGUCgugGAUCGGCAGg -3'
miRNA:   3'- -CUGUaGUCCUAGAGCAG---CUGGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.