miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18550 5' -55.6 NC_004682.1 + 43681 0.66 0.708143
Target:  5'- -aGGcgaagaACUucUCGAUCUGuUCGAGCCCGAu -3'
miRNA:   3'- aaCC------UGA--AGCUGGGC-AGCUUGGGCUc -5'
18550 5' -55.6 NC_004682.1 + 44518 0.66 0.686483
Target:  5'- -cGGACccagcgggUCGGCCUGUCcGGugCCGuGg -3'
miRNA:   3'- aaCCUGa-------AGCUGGGCAG-CUugGGCuC- -5'
18550 5' -55.6 NC_004682.1 + 36100 0.66 0.675569
Target:  5'- -cGGACcUCGGugucaccaCCGUCGAAgCCGAa -3'
miRNA:   3'- aaCCUGaAGCUg-------GGCAGCUUgGGCUc -5'
18550 5' -55.6 NC_004682.1 + 48976 0.66 0.673381
Target:  5'- -aGGGCcuugCGGCCCGauggggccgggGAGCCCGAGc -3'
miRNA:   3'- aaCCUGaa--GCUGGGCag---------CUUGGGCUC- -5'
18550 5' -55.6 NC_004682.1 + 46797 0.66 0.664614
Target:  5'- cUGGGCggUGuacuuCCCGUCGA-UCCGGGc -3'
miRNA:   3'- aACCUGaaGCu----GGGCAGCUuGGGCUC- -5'
18550 5' -55.6 NC_004682.1 + 23041 0.66 0.653629
Target:  5'- -cGGGCUUCGAUCCaaCGGACUgGGu -3'
miRNA:   3'- aaCCUGAAGCUGGGcaGCUUGGgCUc -5'
18550 5' -55.6 NC_004682.1 + 22989 0.67 0.642624
Target:  5'- gUGGAUUcgUCGcaacgugacGCCCGUCGGAaagcaCCGGGc -3'
miRNA:   3'- aACCUGA--AGC---------UGGGCAGCUUg----GGCUC- -5'
18550 5' -55.6 NC_004682.1 + 49735 0.67 0.631609
Target:  5'- gUUGGGCUUCgggGACuuGagGAGCCCaucGAGg -3'
miRNA:   3'- -AACCUGAAG---CUGggCagCUUGGG---CUC- -5'
18550 5' -55.6 NC_004682.1 + 1531 0.68 0.565858
Target:  5'- -gGGAgUUCGACaUCGUCGGGgCCGuGg -3'
miRNA:   3'- aaCCUgAAGCUG-GGCAGCUUgGGCuC- -5'
18550 5' -55.6 NC_004682.1 + 35284 0.68 0.565858
Target:  5'- ---aGCUUCGcCCCGaacugaCGGACCCGAGa -3'
miRNA:   3'- aaccUGAAGCuGGGCa-----GCUUGGGCUC- -5'
18550 5' -55.6 NC_004682.1 + 47038 0.68 0.565858
Target:  5'- -gGGACguagaCGACCC-UCGGAUUCGAGu -3'
miRNA:   3'- aaCCUGaa---GCUGGGcAGCUUGGGCUC- -5'
18550 5' -55.6 NC_004682.1 + 38854 0.68 0.533592
Target:  5'- gUGGAUggCaGCCgCGUCGAACuuGAGc -3'
miRNA:   3'- aACCUGaaGcUGG-GCAGCUUGggCUC- -5'
18550 5' -55.6 NC_004682.1 + 6322 0.7 0.461229
Target:  5'- -cGGACaggcCGACCCGcUGggUCCGGGa -3'
miRNA:   3'- aaCCUGaa--GCUGGGCaGCuuGGGCUC- -5'
18550 5' -55.6 NC_004682.1 + 46881 0.7 0.461229
Target:  5'- cUGGAUgcUGGCCaUGUCGAGCCCGu- -3'
miRNA:   3'- aACCUGaaGCUGG-GCAGCUUGGGCuc -5'
18550 5' -55.6 NC_004682.1 + 4906 0.7 0.455263
Target:  5'- --cGACUUCaucgaggagaaccagGACCCGgacgacggCGAGCCCGAGu -3'
miRNA:   3'- aacCUGAAG---------------CUGGGCa-------GCUUGGGCUC- -5'
18550 5' -55.6 NC_004682.1 + 33625 0.7 0.430864
Target:  5'- gUGGAUgaCGAUCCacggagcGUCGAACCCGGu -3'
miRNA:   3'- aACCUGaaGCUGGG-------CAGCUUGGGCUc -5'
18550 5' -55.6 NC_004682.1 + 8975 0.73 0.302856
Target:  5'- -aGGGCUUCGGCUCGgCGGGgCCGAu -3'
miRNA:   3'- aaCCUGAAGCUGGGCaGCUUgGGCUc -5'
18550 5' -55.6 NC_004682.1 + 33895 0.73 0.287358
Target:  5'- -aGGACUUCGGcugccgccuugauCCCGUCcAugCCGAGg -3'
miRNA:   3'- aaCCUGAAGCU-------------GGGCAGcUugGGCUC- -5'
18550 5' -55.6 NC_004682.1 + 42664 1.05 0.001596
Target:  5'- gUUGGACUUCGACCCGUCGAACCCGAGc -3'
miRNA:   3'- -AACCUGAAGCUGGGCAGCUUGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.