Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18550 | 5' | -55.6 | NC_004682.1 | + | 43681 | 0.66 | 0.708143 |
Target: 5'- -aGGcgaagaACUucUCGAUCUGuUCGAGCCCGAu -3' miRNA: 3'- aaCC------UGA--AGCUGGGC-AGCUUGGGCUc -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 44518 | 0.66 | 0.686483 |
Target: 5'- -cGGACccagcgggUCGGCCUGUCcGGugCCGuGg -3' miRNA: 3'- aaCCUGa-------AGCUGGGCAG-CUugGGCuC- -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 36100 | 0.66 | 0.675569 |
Target: 5'- -cGGACcUCGGugucaccaCCGUCGAAgCCGAa -3' miRNA: 3'- aaCCUGaAGCUg-------GGCAGCUUgGGCUc -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 48976 | 0.66 | 0.673381 |
Target: 5'- -aGGGCcuugCGGCCCGauggggccgggGAGCCCGAGc -3' miRNA: 3'- aaCCUGaa--GCUGGGCag---------CUUGGGCUC- -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 46797 | 0.66 | 0.664614 |
Target: 5'- cUGGGCggUGuacuuCCCGUCGA-UCCGGGc -3' miRNA: 3'- aACCUGaaGCu----GGGCAGCUuGGGCUC- -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 23041 | 0.66 | 0.653629 |
Target: 5'- -cGGGCUUCGAUCCaaCGGACUgGGu -3' miRNA: 3'- aaCCUGAAGCUGGGcaGCUUGGgCUc -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 22989 | 0.67 | 0.642624 |
Target: 5'- gUGGAUUcgUCGcaacgugacGCCCGUCGGAaagcaCCGGGc -3' miRNA: 3'- aACCUGA--AGC---------UGGGCAGCUUg----GGCUC- -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 49735 | 0.67 | 0.631609 |
Target: 5'- gUUGGGCUUCgggGACuuGagGAGCCCaucGAGg -3' miRNA: 3'- -AACCUGAAG---CUGggCagCUUGGG---CUC- -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 35284 | 0.68 | 0.565858 |
Target: 5'- ---aGCUUCGcCCCGaacugaCGGACCCGAGa -3' miRNA: 3'- aaccUGAAGCuGGGCa-----GCUUGGGCUC- -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 1531 | 0.68 | 0.565858 |
Target: 5'- -gGGAgUUCGACaUCGUCGGGgCCGuGg -3' miRNA: 3'- aaCCUgAAGCUG-GGCAGCUUgGGCuC- -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 47038 | 0.68 | 0.565858 |
Target: 5'- -gGGACguagaCGACCC-UCGGAUUCGAGu -3' miRNA: 3'- aaCCUGaa---GCUGGGcAGCUUGGGCUC- -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 38854 | 0.68 | 0.533592 |
Target: 5'- gUGGAUggCaGCCgCGUCGAACuuGAGc -3' miRNA: 3'- aACCUGaaGcUGG-GCAGCUUGggCUC- -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 6322 | 0.7 | 0.461229 |
Target: 5'- -cGGACaggcCGACCCGcUGggUCCGGGa -3' miRNA: 3'- aaCCUGaa--GCUGGGCaGCuuGGGCUC- -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 46881 | 0.7 | 0.461229 |
Target: 5'- cUGGAUgcUGGCCaUGUCGAGCCCGu- -3' miRNA: 3'- aACCUGaaGCUGG-GCAGCUUGGGCuc -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 4906 | 0.7 | 0.455263 |
Target: 5'- --cGACUUCaucgaggagaaccagGACCCGgacgacggCGAGCCCGAGu -3' miRNA: 3'- aacCUGAAG---------------CUGGGCa-------GCUUGGGCUC- -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 33625 | 0.7 | 0.430864 |
Target: 5'- gUGGAUgaCGAUCCacggagcGUCGAACCCGGu -3' miRNA: 3'- aACCUGaaGCUGGG-------CAGCUUGGGCUc -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 8975 | 0.73 | 0.302856 |
Target: 5'- -aGGGCUUCGGCUCGgCGGGgCCGAu -3' miRNA: 3'- aaCCUGAAGCUGGGCaGCUUgGGCUc -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 33895 | 0.73 | 0.287358 |
Target: 5'- -aGGACUUCGGcugccgccuugauCCCGUCcAugCCGAGg -3' miRNA: 3'- aaCCUGAAGCU-------------GGGCAGcUugGGCUC- -5' |
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18550 | 5' | -55.6 | NC_004682.1 | + | 42664 | 1.05 | 0.001596 |
Target: 5'- gUUGGACUUCGACCCGUCGAACCCGAGc -3' miRNA: 3'- -AACCUGAAGCUGGGCAGCUUGGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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