Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18551 | 3' | -52.2 | NC_004682.1 | + | 45936 | 0.66 | 0.867818 |
Target: 5'- aCGugGUGcCGCCcgaguagcgCGGGCUcaccgagcCCUUCACu -3' miRNA: 3'- aGCugCAU-GCGGa--------GCUUGA--------GGAAGUG- -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 45320 | 0.66 | 0.854421 |
Target: 5'- cUCGAUGUcgcggcggucgcacaGCGCgUUGAugUCCgggCGCu -3' miRNA: 3'- -AGCUGCA---------------UGCGgAGCUugAGGaa-GUG- -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 35446 | 0.66 | 0.850973 |
Target: 5'- gUCGACaggACGCCUgc--CUCCUUCAUc -3' miRNA: 3'- -AGCUGca-UGCGGAgcuuGAGGAAGUG- -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 45788 | 0.66 | 0.850973 |
Target: 5'- gUCGGCGUACGCgU--AGC-CCUUCGg -3' miRNA: 3'- -AGCUGCAUGCGgAgcUUGaGGAAGUg -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 28298 | 0.67 | 0.833173 |
Target: 5'- -gGGCGUugGCCUCGGcauggACUgCcaCGCa -3' miRNA: 3'- agCUGCAugCGGAGCU-----UGAgGaaGUG- -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 32110 | 0.67 | 0.833173 |
Target: 5'- uUCGuCGaUGCGCUgcuggaGGGCUgCCUUCGCg -3' miRNA: 3'- -AGCuGC-AUGCGGag----CUUGA-GGAAGUG- -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 17544 | 0.67 | 0.813535 |
Target: 5'- cUCGGCucacuggGUACGgCUCuGGCUCCUaucgUCACg -3' miRNA: 3'- -AGCUG-------CAUGCgGAGcUUGAGGA----AGUG- -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 25885 | 0.68 | 0.784999 |
Target: 5'- gUCGGCGUugGUCUUGucgguCUCCUg--- -3' miRNA: 3'- -AGCUGCAugCGGAGCuu---GAGGAagug -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 34235 | 0.69 | 0.721869 |
Target: 5'- gUUGACGUucGCGUCUCGGAUcgCCaUCAUc -3' miRNA: 3'- -AGCUGCA--UGCGGAGCUUGa-GGaAGUG- -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 15341 | 0.69 | 0.699952 |
Target: 5'- gCGACG-ACGCCgUCGuGCUCCgcaACg -3' miRNA: 3'- aGCUGCaUGCGG-AGCuUGAGGaagUG- -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 19765 | 0.7 | 0.644162 |
Target: 5'- cCGugGUuggGCGCUcCGAACUCCccCGCg -3' miRNA: 3'- aGCugCA---UGCGGaGCUUGAGGaaGUG- -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 32763 | 0.7 | 0.637421 |
Target: 5'- uUCGuCGUACGCCUCggcgcuggcgugcugGAucucuucgagaaGCUCCUUgGCg -3' miRNA: 3'- -AGCuGCAUGCGGAG---------------CU------------UGAGGAAgUG- -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 26183 | 0.7 | 0.632925 |
Target: 5'- gUUGGCGUaguucccggcACGCCUCGAcaUCCUggCACc -3' miRNA: 3'- -AGCUGCA----------UGCGGAGCUugAGGAa-GUG- -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 24622 | 0.7 | 0.621687 |
Target: 5'- cCGGCGaACGCCaCGGGCUCCggUGCc -3' miRNA: 3'- aGCUGCaUGCGGaGCUUGAGGaaGUG- -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 31394 | 0.71 | 0.603731 |
Target: 5'- gCGACGUugGCgUCGAuguagugcuugaccaACUCCUcCAg -3' miRNA: 3'- aGCUGCAugCGgAGCU---------------UGAGGAaGUg -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 36475 | 0.71 | 0.588071 |
Target: 5'- gUCcGCGUACGCCUCG--UUCCggccUCGCa -3' miRNA: 3'- -AGcUGCAUGCGGAGCuuGAGGa---AGUG- -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 17839 | 0.72 | 0.543826 |
Target: 5'- cUCGACGUGgGCCaugaGAGCgUCCUggagCACg -3' miRNA: 3'- -AGCUGCAUgCGGag--CUUG-AGGAa---GUG- -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 39686 | 0.72 | 0.532925 |
Target: 5'- cUCGACGUacucccggcugaACGUCUCGAccuucgGCUCCUggccuugguccgUCGCg -3' miRNA: 3'- -AGCUGCA------------UGCGGAGCU------UGAGGA------------AGUG- -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 16367 | 0.72 | 0.522103 |
Target: 5'- gUCGACuGgcCGUCUCGAACuUCCggCGCg -3' miRNA: 3'- -AGCUG-CauGCGGAGCUUG-AGGaaGUG- -5' |
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18551 | 3' | -52.2 | NC_004682.1 | + | 37004 | 0.73 | 0.490179 |
Target: 5'- ----gGUugGCCUCGGccuuccggccucGCUCCUUCGCc -3' miRNA: 3'- agcugCAugCGGAGCU------------UGAGGAAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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