Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18552 | 3' | -52.2 | NC_004682.1 | + | 47530 | 0.66 | 0.866525 |
|
Target: 5'- uGGGUcGaCGGggUGCGU--GCcCAUCAGGu -3' miRNA: 3'- -CCCA-C-GCCa-ACGCGaaUGaGUAGUCC- -5' |
|||||||
| 18552 | 3' | -52.2 | NC_004682.1 | + | 16908 | 0.67 | 0.793385 |
|
Target: 5'- cGGUGcCGGUgucgGCGCUguggcGCUCGgcauggaCGGGa -3' miRNA: 3'- cCCAC-GCCAa---CGCGAa----UGAGUa------GUCC- -5' |
|||||||
| 18552 | 3' | -52.2 | NC_004682.1 | + | 45763 | 0.7 | 0.642211 |
|
Target: 5'- cGGGUGCGGgaGCaGCcggUGCggCGUCGGc -3' miRNA: 3'- -CCCACGCCaaCG-CGa--AUGa-GUAGUCc -5' |
|||||||
| 18552 | 3' | -52.2 | NC_004682.1 | + | 37659 | 0.74 | 0.421611 |
|
Target: 5'- cGGGaucUGCGuGUcgcugaugacgacgaUGCGCUUGCUCA-CAGGu -3' miRNA: 3'- -CCC---ACGC-CA---------------ACGCGAAUGAGUaGUCC- -5' |
|||||||
| 18552 | 3' | -52.2 | NC_004682.1 | + | 42143 | 1.14 | 0.00088 |
|
Target: 5'- cGGGUGCGGUUGCGCUUACUCAUCAGGa -3' miRNA: 3'- -CCCACGCCAACGCGAAUGAGUAGUCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home