miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18553 3' -55.1 NC_004682.1 + 8968 0.66 0.707964
Target:  5'- gCGGCcaGCUCGcgCGGUCUgugcUGGCCCc -3'
miRNA:   3'- -GUUGa-CGAGCa-GCCGGAaua-GCCGGG- -5'
18553 3' -55.1 NC_004682.1 + 46146 0.66 0.697118
Target:  5'- gCAcCUGCUCGaUCaGGCCgacguaGUCGGUgCCg -3'
miRNA:   3'- -GUuGACGAGC-AG-CCGGaa----UAGCCG-GG- -5'
18553 3' -55.1 NC_004682.1 + 37294 0.67 0.642158
Target:  5'- gGACUcgaagccCUCGUUGuCCUgcUCGGCCCg -3'
miRNA:   3'- gUUGAc------GAGCAGCcGGAauAGCCGGG- -5'
18553 3' -55.1 NC_004682.1 + 42907 0.67 0.631096
Target:  5'- -cACUGCUC--UGGCCcgc-CGGCCCc -3'
miRNA:   3'- guUGACGAGcaGCCGGaauaGCCGGG- -5'
18553 3' -55.1 NC_004682.1 + 39993 0.67 0.62999
Target:  5'- gAACUGCggagCGUCugcgcgaGGCCga---GGCCCu -3'
miRNA:   3'- gUUGACGa---GCAG-------CCGGaauagCCGGG- -5'
18553 3' -55.1 NC_004682.1 + 31816 0.68 0.586954
Target:  5'- --uCUGgaUCGUCugcuGGCCUUGUaCGGCCUc -3'
miRNA:   3'- guuGACg-AGCAG----CCGGAAUA-GCCGGG- -5'
18553 3' -55.1 NC_004682.1 + 45637 0.68 0.586954
Target:  5'- uGACggugGUgcaGUCGGCCUgcuUCaGCCCg -3'
miRNA:   3'- gUUGa---CGag-CAGCCGGAau-AGcCGGG- -5'
18553 3' -55.1 NC_004682.1 + 48831 0.68 0.575991
Target:  5'- aCGGgUGCgcCGUCGGCCUcgGggGGCCa -3'
miRNA:   3'- -GUUgACGa-GCAGCCGGAa-UagCCGGg -5'
18553 3' -55.1 NC_004682.1 + 25880 0.68 0.565076
Target:  5'- -cACUcGUcggCGUUGGUCUUGUCGGUCUc -3'
miRNA:   3'- guUGA-CGa--GCAGCCGGAAUAGCCGGG- -5'
18553 3' -55.1 NC_004682.1 + 44095 0.68 0.565076
Target:  5'- --cCUGCcucCGUCGGgaggAUCGGCCCg -3'
miRNA:   3'- guuGACGa--GCAGCCggaaUAGCCGGG- -5'
18553 3' -55.1 NC_004682.1 + 48214 0.68 0.565076
Target:  5'- uCGACcaGgaCGcCGGCCUcgUAUCGGCCa -3'
miRNA:   3'- -GUUGa-CgaGCaGCCGGA--AUAGCCGGg -5'
18553 3' -55.1 NC_004682.1 + 8908 0.69 0.522035
Target:  5'- aAGCUGCUCGcgcaugUCGGCUaucccCGGCUCu -3'
miRNA:   3'- gUUGACGAGC------AGCCGGaaua-GCCGGG- -5'
18553 3' -55.1 NC_004682.1 + 22882 0.69 0.500989
Target:  5'- ----gGCcgUCGUCGGCCUgg-UGGCCUu -3'
miRNA:   3'- guugaCG--AGCAGCCGGAauaGCCGGG- -5'
18553 3' -55.1 NC_004682.1 + 22059 0.7 0.490606
Target:  5'- ----cGCUC-UCGGCCUga-CGGCCUg -3'
miRNA:   3'- guugaCGAGcAGCCGGAauaGCCGGG- -5'
18553 3' -55.1 NC_004682.1 + 1849 0.7 0.480324
Target:  5'- --uCUGCUCGggcucccCGGCCccAUCGGgCCg -3'
miRNA:   3'- guuGACGAGCa------GCCGGaaUAGCCgGG- -5'
18553 3' -55.1 NC_004682.1 + 24186 0.7 0.450135
Target:  5'- aAGCUGCUCGaCGGCUg-GUCGuucauccgcaucGCCCa -3'
miRNA:   3'- gUUGACGAGCaGCCGGaaUAGC------------CGGG- -5'
18553 3' -55.1 NC_004682.1 + 43097 0.7 0.450135
Target:  5'- -cGCUGUgcgCGUaCGGCCUUGcggUGGUCCu -3'
miRNA:   3'- guUGACGa--GCA-GCCGGAAUa--GCCGGG- -5'
18553 3' -55.1 NC_004682.1 + 46864 0.79 0.124503
Target:  5'- aAGCcuUGCUUGUCGGCCUggaugcuggccaUGUCGaGCCCg -3'
miRNA:   3'- gUUG--ACGAGCAGCCGGA------------AUAGC-CGGG- -5'
18553 3' -55.1 NC_004682.1 + 32130 0.81 0.09646
Target:  5'- gGGCUGCcuUCG-CGGCCUUGUCGGUCg -3'
miRNA:   3'- gUUGACG--AGCaGCCGGAAUAGCCGGg -5'
18553 3' -55.1 NC_004682.1 + 41846 1.11 0.000689
Target:  5'- aCAACUGCUCGUCGGCCUUAUCGGCCCc -3'
miRNA:   3'- -GUUGACGAGCAGCCGGAAUAGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.