Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18556 | 3' | -54.2 | NC_004682.1 | + | 29925 | 0.68 | 0.65279 |
Target: 5'- cACCACuUCGcaGGCCGAagaugauccacAGCUUGGggaacuGCAGCu -3' miRNA: 3'- -UGGUG-AGC--UUGGCU-----------UCGAGCC------UGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 28093 | 0.7 | 0.521085 |
Target: 5'- -aCGCUCGGGCgUGGcuGCUCGcGGCGGCg -3' miRNA: 3'- ugGUGAGCUUG-GCUu-CGAGC-CUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 25568 | 0.66 | 0.739964 |
Target: 5'- cGCCACUgGGccacGCCGuGGGCcuugacgCGGugGGCu -3' miRNA: 3'- -UGGUGAgCU----UGGC-UUCGa------GCCugUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 25188 | 0.68 | 0.630579 |
Target: 5'- -gUACcCGGACCccaguGGAGCgccCGGACAGCg -3' miRNA: 3'- ugGUGaGCUUGG-----CUUCGa--GCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 21703 | 0.66 | 0.781264 |
Target: 5'- cGCCgaACUCGAACUGGAGaacgccgaaCUCcGGGCgaAGCu -3' miRNA: 3'- -UGG--UGAGCUUGGCUUC---------GAG-CCUG--UCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 21316 | 0.68 | 0.640578 |
Target: 5'- gACaACUCGGGCUGggGCagugagaccgccuUCGG-CGGCu -3' miRNA: 3'- -UGgUGAGCUUGGCuuCG-------------AGCCuGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 18960 | 0.75 | 0.270975 |
Target: 5'- cGCCAaggagGGGCUGAAGUUCGGugAGCa -3' miRNA: 3'- -UGGUgag--CUUGGCUUCGAGCCugUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 18338 | 0.85 | 0.059992 |
Target: 5'- gGCCcguuCUCGGGCCGAGGCUgGGugAGCu -3' miRNA: 3'- -UGGu---GAGCUUGGCUUCGAgCCugUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 15944 | 0.72 | 0.410287 |
Target: 5'- cGCCAacggCGAGCCGggGUUCuGGACucgucGCu -3' miRNA: 3'- -UGGUga--GCUUGGCuuCGAG-CCUGu----CG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 15317 | 0.71 | 0.479233 |
Target: 5'- cGCCugUCaAGCUGGAGCUgGGA-GGCg -3' miRNA: 3'- -UGGugAGcUUGGCUUCGAgCCUgUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 15238 | 0.66 | 0.778245 |
Target: 5'- aGCC-CUCGGACCacuucGAguucacguucaugcGGCUCauggaGGGCGGCg -3' miRNA: 3'- -UGGuGAGCUUGG-----CU--------------UCGAG-----CCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 14670 | 0.8 | 0.138032 |
Target: 5'- gGCCugUgGAcGCCGAccGGCUgGGACAGCa -3' miRNA: 3'- -UGGugAgCU-UGGCU--UCGAgCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 11509 | 0.68 | 0.630579 |
Target: 5'- cCCACUCa-----GGGCUCGGGCAGCc -3' miRNA: 3'- uGGUGAGcuuggcUUCGAGCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 11006 | 0.75 | 0.270974 |
Target: 5'- cGCgGCUggcaagagCGcAGCCGAGGCaUCGGGCGGCg -3' miRNA: 3'- -UGgUGA--------GC-UUGGCUUCG-AGCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 9436 | 0.67 | 0.674922 |
Target: 5'- uUCGCUCGGucACCGAcgcAGCUgccCGGAC-GCu -3' miRNA: 3'- uGGUGAGCU--UGGCU---UCGA---GCCUGuCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 8058 | 0.68 | 0.630579 |
Target: 5'- uCCACaUgGGACCGAAGCcCGGuCuGCc -3' miRNA: 3'- uGGUG-AgCUUGGCUUCGaGCCuGuCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 7696 | 0.74 | 0.315342 |
Target: 5'- gACCGCcUGGACCGGAGCgUGG-CGGCu -3' miRNA: 3'- -UGGUGaGCUUGGCUUCGaGCCuGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 7285 | 0.68 | 0.630579 |
Target: 5'- gGCUACaUCGAcACCGu-GCUgagGGACAGCg -3' miRNA: 3'- -UGGUG-AGCU-UGGCuuCGAg--CCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 6857 | 0.67 | 0.674922 |
Target: 5'- gGCCcgaACUcCGuugugucccAACUGAucgAGCUUGGACAGCg -3' miRNA: 3'- -UGG---UGA-GC---------UUGGCU---UCGAGCCUGUCG- -5' |
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18556 | 3' | -54.2 | NC_004682.1 | + | 6334 | 0.67 | 0.717523 |
Target: 5'- cCCGCUgGGuccgggacuccccGCCGAcacGGCgCGGGCGGUg -3' miRNA: 3'- uGGUGAgCU-------------UGGCU---UCGaGCCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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