Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18556 | 3' | -54.2 | NC_004682.1 | + | 18960 | 0.75 | 0.270975 |
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Target: 5'- cGCCAaggagGGGCUGAAGUUCGGugAGCa -3' miRNA: 3'- -UGGUgag--CUUGGCUUCGAGCCugUCG- -5' |
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| 18556 | 3' | -54.2 | NC_004682.1 | + | 11006 | 0.75 | 0.270974 |
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Target: 5'- cGCgGCUggcaagagCGcAGCCGAGGCaUCGGGCGGCg -3' miRNA: 3'- -UGgUGA--------GC-UUGGCUUCG-AGCCUGUCG- -5' |
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| 18556 | 3' | -54.2 | NC_004682.1 | + | 4875 | 0.77 | 0.202847 |
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Target: 5'- aGCCACgCGGAgUGAagGGCUCGGugAGCc -3' miRNA: 3'- -UGGUGaGCUUgGCU--UCGAGCCugUCG- -5' |
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| 18556 | 3' | -54.2 | NC_004682.1 | + | 33052 | 0.79 | 0.15009 |
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Target: 5'- cCCGCgu--GCCGggGUUCGGACGGCu -3' miRNA: 3'- uGGUGagcuUGGCuuCGAGCCUGUCG- -5' |
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| 18556 | 3' | -54.2 | NC_004682.1 | + | 14670 | 0.8 | 0.138032 |
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Target: 5'- gGCCugUgGAcGCCGAccGGCUgGGACAGCa -3' miRNA: 3'- -UGGugAgCU-UGGCU--UCGAgCCUGUCG- -5' |
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| 18556 | 3' | -54.2 | NC_004682.1 | + | 31986 | 0.83 | 0.082631 |
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Target: 5'- gGCCAUcUGGACCGGcuGCUCGGGCGGCg -3' miRNA: 3'- -UGGUGaGCUUGGCUu-CGAGCCUGUCG- -5' |
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| 18556 | 3' | -54.2 | NC_004682.1 | + | 18338 | 0.85 | 0.059992 |
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Target: 5'- gGCCcguuCUCGGGCCGAGGCUgGGugAGCu -3' miRNA: 3'- -UGGu---GAGCUUGGCUUCGAgCCugUCG- -5' |
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| 18556 | 3' | -54.2 | NC_004682.1 | + | 40407 | 1.12 | 0.00073 |
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Target: 5'- aACCACUCGAACCGAAGCUCGGACAGCa -3' miRNA: 3'- -UGGUGAGCUUGGCUUCGAGCCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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