miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18556 5' -62.2 NC_004682.1 + 50540 0.66 0.305319
Target:  5'- gUGGGGUaCCcGCUaCCGGGgguacugGGUacuGGGGg -3'
miRNA:   3'- aACCCCA-GGuCGA-GGCCCa------CCA---CCUC- -5'
18556 5' -62.2 NC_004682.1 + 20756 0.67 0.283156
Target:  5'- -cGGuGGUCCGGgUucauggaucacuaCCGGGUGGUccgcgaGGAGa -3'
miRNA:   3'- aaCC-CCAGGUCgA-------------GGCCCACCA------CCUC- -5'
18556 5' -62.2 NC_004682.1 + 43785 0.67 0.276965
Target:  5'- -cGGGG-CaAGCUCCGGGUGaUGGu- -3'
miRNA:   3'- aaCCCCaGgUCGAGGCCCACcACCuc -5'
18556 5' -62.2 NC_004682.1 + 15852 0.67 0.263595
Target:  5'- cUGGaGGUCgaugacgAGUUCUGGGUGGccgUGGAGg -3'
miRNA:   3'- aACC-CCAGg------UCGAGGCCCACC---ACCUC- -5'
18556 5' -62.2 NC_004682.1 + 40442 1.05 0.000329
Target:  5'- gUUGGGGUCCAGCUCCGGGUGGUGGAGu -3'
miRNA:   3'- -AACCCCAGGUCGAGGCCCACCACCUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.