miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18557 5' -53.7 NC_004682.1 + 33907 0.66 0.764292
Target:  5'- gCCGCCUUGAucccguccaugccgaGGccacagcgccgacACCGGCACCGa--- -3'
miRNA:   3'- aGGUGGAACU---------------UC-------------UGGCCGUGGUgaaa -5'
18557 5' -53.7 NC_004682.1 + 42134 0.66 0.761131
Target:  5'- aCCGCCcuccGGGugCGGUugCGCUUa -3'
miRNA:   3'- aGGUGGaac-UUCugGCCGugGUGAAa -5'
18557 5' -53.7 NC_004682.1 + 11484 0.66 0.761131
Target:  5'- uUCCAa---GGAGGCCGGUGCUACg-- -3'
miRNA:   3'- -AGGUggaaCUUCUGGCCGUGGUGaaa -5'
18557 5' -53.7 NC_004682.1 + 47547 0.66 0.739755
Target:  5'- gCCGCCgcugccgaaggUGAAcguauGGCUGGCACCGCc-- -3'
miRNA:   3'- aGGUGGa----------ACUU-----CUGGCCGUGGUGaaa -5'
18557 5' -53.7 NC_004682.1 + 28752 0.66 0.739755
Target:  5'- gCCgAUCUUGGAGACCcGCuCCACg-- -3'
miRNA:   3'- aGG-UGGAACUUCUGGcCGuGGUGaaa -5'
18557 5' -53.7 NC_004682.1 + 17908 0.66 0.728887
Target:  5'- gUCCugACCgagcUGGAGcgucACCGGCACCugUc- -3'
miRNA:   3'- -AGG--UGGa---ACUUC----UGGCCGUGGugAaa -5'
18557 5' -53.7 NC_004682.1 + 19012 0.66 0.717916
Target:  5'- -gCACCggcaUGAGGucGCgGGCACCACg-- -3'
miRNA:   3'- agGUGGa---ACUUC--UGgCCGUGGUGaaa -5'
18557 5' -53.7 NC_004682.1 + 31213 0.67 0.684512
Target:  5'- aUCCugCgaGAccGCCGGCACCAg--- -3'
miRNA:   3'- -AGGugGaaCUucUGGCCGUGGUgaaa -5'
18557 5' -53.7 NC_004682.1 + 137 0.67 0.673254
Target:  5'- aCCGCCggcacGGGCCGGCacaggGCCACa-- -3'
miRNA:   3'- aGGUGGaacu-UCUGGCCG-----UGGUGaaa -5'
18557 5' -53.7 NC_004682.1 + 17673 0.7 0.494728
Target:  5'- aUCCACCguccucGAagaucccuacuGGGCCGGCACCgGCUa- -3'
miRNA:   3'- -AGGUGGaa----CU-----------UCUGGCCGUGG-UGAaa -5'
18557 5' -53.7 NC_004682.1 + 40028 1.07 0.00161
Target:  5'- gUCCACCUUGAAGACCGGCACCACUUUg -3'
miRNA:   3'- -AGGUGGAACUUCUGGCCGUGGUGAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.