Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18558 | 3' | -54.5 | NC_004682.1 | + | 14066 | 0.66 | 0.739881 |
|
Target: 5'- --cCGGGCAcgGUGGACaaggcccUCGCCCUGg -3' miRNA: 3'- uaaGCCUGUa-CGCUUGa------AGCGGGGCa -5' |
|||||||
| 18558 | 3' | -54.5 | NC_004682.1 | + | 6446 | 0.66 | 0.729156 |
|
Target: 5'- --aUGGACgGUGCcaggGAGCUUCGCuCCCa- -3' miRNA: 3'- uaaGCCUG-UACG----CUUGAAGCG-GGGca -5' |
|||||||
| 18558 | 3' | -54.5 | NC_004682.1 | + | 29110 | 0.66 | 0.707417 |
|
Target: 5'- -gUCGG-Cuu-CGAGCUUCGCCCgGa -3' miRNA: 3'- uaAGCCuGuacGCUUGAAGCGGGgCa -5' |
|||||||
| 18558 | 3' | -54.5 | NC_004682.1 | + | 49945 | 0.66 | 0.696427 |
|
Target: 5'- -gUgGGGCGUGCGAugcCUguggcCGUCCCGa -3' miRNA: 3'- uaAgCCUGUACGCUu--GAa----GCGGGGCa -5' |
|||||||
| 18558 | 3' | -54.5 | NC_004682.1 | + | 30905 | 0.67 | 0.650817 |
|
Target: 5'- -cUCGGugAUcgccucgGCGAGCgggUCGCCCUc- -3' miRNA: 3'- uaAGCCugUA-------CGCUUGa--AGCGGGGca -5' |
|||||||
| 18558 | 3' | -54.5 | NC_004682.1 | + | 19881 | 0.67 | 0.629532 |
|
Target: 5'- --gCGGACGUGCGAGgUccaacagaUCaGCCUCGUc -3' miRNA: 3'- uaaGCCUGUACGCUUgA--------AG-CGGGGCA- -5' |
|||||||
| 18558 | 3' | -54.5 | NC_004682.1 | + | 14801 | 0.68 | 0.584832 |
|
Target: 5'- gGUUCGGAgAUGUaccGGGCgcagaUCGUCCCGg -3' miRNA: 3'- -UAAGCCUgUACG---CUUGa----AGCGGGGCa -5' |
|||||||
| 18558 | 3' | -54.5 | NC_004682.1 | + | 39856 | 1.05 | 0.001984 |
|
Target: 5'- aAUUCGGACAUGCGAACUUCGCCCCGUu -3' miRNA: 3'- -UAAGCCUGUACGCUUGAAGCGGGGCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home