Results 61 - 80 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 6542 | 0.67 | 0.471511 |
Target: 5'- cCCGGUCUacgagaACGugGCCGAccucuugcaGCGGuCACg -3' miRNA: 3'- -GGCCAGG------UGCugCGGCUc--------UGCC-GUGg -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 50397 | 0.67 | 0.465741 |
Target: 5'- aCCGGcCCugGAgGCCGGuucuaugucaaguauGAcCGGC-CCu -3' miRNA: 3'- -GGCCaGGugCUgCGGCU---------------CU-GCCGuGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 28634 | 0.67 | 0.461914 |
Target: 5'- aCCGGUCCA-G-UGCCGGccuuuguauCGGUACCg -3' miRNA: 3'- -GGCCAGGUgCuGCGGCUcu-------GCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 5113 | 0.67 | 0.51086 |
Target: 5'- gUGGUCgACGccGCGCCGAuccUGGCGCg -3' miRNA: 3'- gGCCAGgUGC--UGCGGCUcu-GCCGUGg -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 3653 | 0.67 | 0.481209 |
Target: 5'- aCCGugaGUaCCGC--CGaCGAGGCGGCACCg -3' miRNA: 3'- -GGC---CA-GGUGcuGCgGCUCUGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 7851 | 0.67 | 0.500888 |
Target: 5'- aCCGGcaugcUCUACGACGCCcuGGA-GGCcCCc -3' miRNA: 3'- -GGCC-----AGGUGCUGCGGc-UCUgCCGuGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 4618 | 0.67 | 0.500888 |
Target: 5'- cCCGGaggCCACGcucGCuGCCGAGAUcgaGGcCAUCg -3' miRNA: 3'- -GGCCa--GGUGC---UG-CGGCUCUG---CC-GUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 30470 | 0.67 | 0.491003 |
Target: 5'- aCCGGUCUgcuCGGCcaCCGucuUGGCACCa -3' miRNA: 3'- -GGCCAGGu--GCUGc-GGCucuGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 29313 | 0.67 | 0.491003 |
Target: 5'- uCCGGgucUCCugGugGUCGGugccGACGuGgACCg -3' miRNA: 3'- -GGCC---AGGugCugCGGCU----CUGC-CgUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 5545 | 0.67 | 0.471511 |
Target: 5'- aCGGUCuCGCGACGgaucaaCGGGACGaacccgaaCACCg -3' miRNA: 3'- gGCCAG-GUGCUGCg-----GCUCUGCc-------GUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 10999 | 0.66 | 0.559763 |
Target: 5'- uCCcGUUCGCGGCuggcaagagcgcaGCCGAGgcaucggGCGGCGCg -3' miRNA: 3'- -GGcCAGGUGCUG-------------CGGCUC-------UGCCGUGg -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 30370 | 0.66 | 0.530027 |
Target: 5'- gCGGUUaGCGuccuccaGCGUCGuGAUGGUGCCg -3' miRNA: 3'- gGCCAGgUGC-------UGCGGCuCUGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 31702 | 0.66 | 0.561832 |
Target: 5'- cCCGGUCCcCuuCGuuGGGAcCGGCuaggguaaACCa -3' miRNA: 3'- -GGCCAGGuGcuGCggCUCU-GCCG--------UGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 27977 | 0.66 | 0.561832 |
Target: 5'- aCGG-CCAUGAUGCCac--CGcGCACCa -3' miRNA: 3'- gGCCaGGUGCUGCGGcucuGC-CGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 18968 | 0.66 | 0.561832 |
Target: 5'- aCGuUCCACGAacugcaaaGCCuguaGGAgGGCACCu -3' miRNA: 3'- gGCcAGGUGCUg-------CGGc---UCUgCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 35850 | 0.66 | 0.541243 |
Target: 5'- cCCGG-CgCAcCGACGCCuuGugGGCguggaaGCCg -3' miRNA: 3'- -GGCCaG-GU-GCUGCGGcuCugCCG------UGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 22052 | 0.66 | 0.541243 |
Target: 5'- cCCuGUCCGCucucggccuGACgGCCugugaggggGAGACGaGCACCa -3' miRNA: 3'- -GGcCAGGUG---------CUG-CGG---------CUCUGC-CGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 14487 | 0.66 | 0.541243 |
Target: 5'- aCCgGGUCCGCaGgGUCGAGcACGuCACCc -3' miRNA: 3'- -GG-CCAGGUGcUgCGGCUC-UGCcGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 11845 | 0.66 | 0.531043 |
Target: 5'- cCCGuUCCACGGCGauGAGAcgccuuCGGCGUCg -3' miRNA: 3'- -GGCcAGGUGCUGCggCUCU------GCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 18142 | 0.66 | 0.531043 |
Target: 5'- -aGGcCCGCGAagcgGCCaGGGCGGUccuGCCg -3' miRNA: 3'- ggCCaGGUGCUg---CGGcUCUGCCG---UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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