miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18559 3' -59.2 NC_004682.1 + 17370 0.69 0.39782
Target:  5'- gCGGcaaCgGCGGCaGCCGGGGuggUGGCACCc -3'
miRNA:   3'- gGCCa--GgUGCUG-CGGCUCU---GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 26554 0.69 0.39782
Target:  5'- aCGGUCCACGGguUCGGGugugGCGGCuuGCCc -3'
miRNA:   3'- gGCCAGGUGCUgcGGCUC----UGCCG--UGG- -5'
18559 3' -59.2 NC_004682.1 + 29121 0.68 0.405739
Target:  5'- aCCGcGUCCAUcAUGCCGcccAGAggcgggaggucgaUGGCACCa -3'
miRNA:   3'- -GGC-CAGGUGcUGCGGC---UCU-------------GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 41879 0.68 0.406625
Target:  5'- gCCGGaagcccucaagcUCCugGcGCGCUGcGAUGGCGCg -3'
miRNA:   3'- -GGCC------------AGGugC-UGCGGCuCUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 40788 0.68 0.406625
Target:  5'- aUCGGUCUGCGAUGUCGucagcccccCGaGCGCCa -3'
miRNA:   3'- -GGCCAGGUGCUGCGGCucu------GC-CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 44295 0.68 0.406625
Target:  5'- uCgGGUCCAUGAUGUCGuGcuUGaGCACCu -3'
miRNA:   3'- -GgCCAGGUGCUGCGGCuCu-GC-CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 20351 0.68 0.406625
Target:  5'- -gGGUCUACGGCggugguGCCaAGACGGUgGCCg -3'
miRNA:   3'- ggCCAGGUGCUG------CGGcUCUGCCG-UGG- -5'
18559 3' -59.2 NC_004682.1 + 33507 0.68 0.414653
Target:  5'- gCC-GUCCAUGACGCCGuucugcgAGAccCGGUucACCa -3'
miRNA:   3'- -GGcCAGGUGCUGCGGC-------UCU--GCCG--UGG- -5'
18559 3' -59.2 NC_004682.1 + 16738 0.68 0.415551
Target:  5'- uUCGG-CgACGACGCgGAGAaGGCcgguaGCCa -3'
miRNA:   3'- -GGCCaGgUGCUGCGgCUCUgCCG-----UGG- -5'
18559 3' -59.2 NC_004682.1 + 19389 0.68 0.415551
Target:  5'- gCUGuaugUCACGACGCCG-GAuucCGGCACUa -3'
miRNA:   3'- -GGCca--GGUGCUGCGGCuCU---GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 7693 0.68 0.442101
Target:  5'- aCGGUCaCGCGAUGCaCGGcgcaaucGAgGGCaACCu -3'
miRNA:   3'- gGCCAG-GUGCUGCG-GCU-------CUgCCG-UGG- -5'
18559 3' -59.2 NC_004682.1 + 9766 0.68 0.45242
Target:  5'- uCCGGUCCuCGGagaGCCGAcuggugaaGACGGUcgaGCg -3'
miRNA:   3'- -GGCCAGGuGCUg--CGGCU--------CUGCCG---UGg -5'
18559 3' -59.2 NC_004682.1 + 30825 0.68 0.45242
Target:  5'- gCCGGcCC-CGAUGCuCGGGA--GCGCCu -3'
miRNA:   3'- -GGCCaGGuGCUGCG-GCUCUgcCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 13398 0.68 0.45242
Target:  5'- gCGGUCUACGAagGCCcguuCGGCAUCc -3'
miRNA:   3'- gGCCAGGUGCUg-CGGcucuGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 19892 0.68 0.456205
Target:  5'- -aGGUCCAacagaucagccucguCGGCGauCCGAcgGGCGGCACg -3'
miRNA:   3'- ggCCAGGU---------------GCUGC--GGCU--CUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 28634 0.67 0.461914
Target:  5'- aCCGGUCCA-G-UGCCGGccuuuguauCGGUACCg -3'
miRNA:   3'- -GGCCAGGUgCuGCGGCUcu-------GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 50397 0.67 0.465741
Target:  5'- aCCGGcCCugGAgGCCGGuucuaugucaaguauGAcCGGC-CCu -3'
miRNA:   3'- -GGCCaGGugCUgCGGCU---------------CU-GCCGuGG- -5'
18559 3' -59.2 NC_004682.1 + 6542 0.67 0.471511
Target:  5'- cCCGGUCUacgagaACGugGCCGAccucuugcaGCGGuCACg -3'
miRNA:   3'- -GGCCAGG------UGCugCGGCUc--------UGCC-GUGg -5'
18559 3' -59.2 NC_004682.1 + 5545 0.67 0.471511
Target:  5'- aCGGUCuCGCGACGgaucaaCGGGACGaacccgaaCACCg -3'
miRNA:   3'- gGCCAG-GUGCUGCg-----GCUCUGCc-------GUGG- -5'
18559 3' -59.2 NC_004682.1 + 2504 0.67 0.481209
Target:  5'- aCGGaUCaaggGCGACGacaaCGGcGACGGCAUCg -3'
miRNA:   3'- gGCC-AGg---UGCUGCg---GCU-CUGCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.