miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18559 3' -59.2 NC_004682.1 + 14487 0.66 0.541243
Target:  5'- aCCgGGUCCGCaGgGUCGAGcACGuCACCc -3'
miRNA:   3'- -GG-CCAGGUGcUgCGGCUC-UGCcGUGG- -5'
18559 3' -59.2 NC_004682.1 + 14667 0.66 0.541243
Target:  5'- aCCGG-CCugugGACGCCGAccggcuggGACaGCAUCg -3'
miRNA:   3'- -GGCCaGGug--CUGCGGCU--------CUGcCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 16467 0.66 0.520913
Target:  5'- gUCGGUCaACGagauGCGCCGAcGA-GGCGCg -3'
miRNA:   3'- -GGCCAGgUGC----UGCGGCU-CUgCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 16738 0.68 0.415551
Target:  5'- uUCGG-CgACGACGCgGAGAaGGCcgguaGCCa -3'
miRNA:   3'- -GGCCaGgUGCUGCGgCUCUgCCG-----UGG- -5'
18559 3' -59.2 NC_004682.1 + 17326 0.69 0.380582
Target:  5'- aCCgGGUCUcgcagaACGGCGUCauGGACGGCGCg -3'
miRNA:   3'- -GG-CCAGG------UGCUGCGGc-UCUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 17370 0.69 0.39782
Target:  5'- gCGGcaaCgGCGGCaGCCGGGGuggUGGCACCc -3'
miRNA:   3'- gGCCa--GgUGCUG-CGGCUCU---GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 17685 0.7 0.331943
Target:  5'- aUCGG--CACGACGCUGAccACGGCGCUg -3'
miRNA:   3'- -GGCCagGUGCUGCGGCUc-UGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 18003 0.67 0.487074
Target:  5'- gCGGUCaaggaucugaucgACG-CGCCGGGACGcggcuacuuccGCGCCa -3'
miRNA:   3'- gGCCAGg------------UGCuGCGGCUCUGC-----------CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 18142 0.66 0.531043
Target:  5'- -aGGcCCGCGAagcgGCCaGGGCGGUccuGCCg -3'
miRNA:   3'- ggCCaGGUGCUg---CGGcUCUGCCG---UGG- -5'
18559 3' -59.2 NC_004682.1 + 18968 0.66 0.561832
Target:  5'- aCGuUCCACGAacugcaaaGCCuguaGGAgGGCACCu -3'
miRNA:   3'- gGCcAGGUGCUg-------CGGc---UCUgCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 19389 0.68 0.415551
Target:  5'- gCUGuaugUCACGACGCCG-GAuucCGGCACUa -3'
miRNA:   3'- -GGCca--GGUGCUGCGGCuCU---GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 19819 0.75 0.157091
Target:  5'- cCCGaUCCAgGuCGCCGAGGCGcugauGCGCCg -3'
miRNA:   3'- -GGCcAGGUgCuGCGGCUCUGC-----CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 19892 0.68 0.456205
Target:  5'- -aGGUCCAacagaucagccucguCGGCGauCCGAcgGGCGGCACg -3'
miRNA:   3'- ggCCAGGU---------------GCUGC--GGCU--CUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 20351 0.68 0.406625
Target:  5'- -gGGUCUACGGCggugguGCCaAGACGGUgGCCg -3'
miRNA:   3'- ggCCAGGUGCUG------CGGcUCUGCCG-UGG- -5'
18559 3' -59.2 NC_004682.1 + 20436 0.66 0.520913
Target:  5'- -aGGcCCugGGgGCUcgaauGAGccACGGCACCa -3'
miRNA:   3'- ggCCaGGugCUgCGG-----CUC--UGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 22052 0.66 0.541243
Target:  5'- cCCuGUCCGCucucggccuGACgGCCugugaggggGAGACGaGCACCa -3'
miRNA:   3'- -GGcCAGGUG---------CUG-CGG---------CUCUGC-CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 22137 0.66 0.520913
Target:  5'- --cGUCC-CGcCGCCGccgcgaguGGGCGGCAUCg -3'
miRNA:   3'- ggcCAGGuGCuGCGGC--------UCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 22763 0.67 0.51086
Target:  5'- cCCGagcGUCUuCGuCGCCGAGGgaGGCACa -3'
miRNA:   3'- -GGC---CAGGuGCuGCGGCUCUg-CCGUGg -5'
18559 3' -59.2 NC_004682.1 + 23376 0.66 0.565976
Target:  5'- aCGGaCCugGG-GCCGAGcuugaaggcuggcuCGGCACUg -3'
miRNA:   3'- gGCCaGGugCUgCGGCUCu-------------GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 24402 0.72 0.248815
Target:  5'- aCGGUgCugGACGCUGAGGgcaacccgaucCGGCugGCCc -3'
miRNA:   3'- gGCCAgGugCUGCGGCUCU-----------GCCG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.