Results 81 - 97 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 35955 | 0.66 | 0.572207 |
Target: 5'- gCCGaacacaCCagGCGugGUCGAGGCGuucGCGCCg -3' miRNA: 3'- -GGCca----GG--UGCugCGGCUCUGC---CGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 36721 | 0.66 | 0.561832 |
Target: 5'- aCGG-CCugGACGCgGGGcaucugggccauGCGGaACCu -3' miRNA: 3'- gGCCaGGugCUGCGgCUC------------UGCCgUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 38488 | 0.66 | 0.531043 |
Target: 5'- gUCGc-CCAUGACGCCGAccacGCGGUugCc -3' miRNA: 3'- -GGCcaGGUGCUGCGGCUc---UGCCGugG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 38838 | 0.7 | 0.324294 |
Target: 5'- aCGGcUUguCGAUGCCGuGGAUGGCAgCCg -3' miRNA: 3'- gGCC-AGguGCUGCGGC-UCUGCCGU-GG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 39039 | 1.13 | 0.000257 |
Target: 5'- gCCGGUCCACGACGCCGAGACGGCACCg -3' miRNA: 3'- -GGCCAGGUGCUGCGGCUCUGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 40337 | 0.75 | 0.165537 |
Target: 5'- gUGGUUCACcGCGUCGAGcGCGGuCACCg -3' miRNA: 3'- gGCCAGGUGcUGCGGCUC-UGCC-GUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 40788 | 0.68 | 0.406625 |
Target: 5'- aUCGGUCUGCGAUGUCGucagcccccCGaGCGCCa -3' miRNA: 3'- -GGCCAGGUGCUGCGGCucu------GC-CGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 41879 | 0.68 | 0.406625 |
Target: 5'- gCCGGaagcccucaagcUCCugGcGCGCUGcGAUGGCGCg -3' miRNA: 3'- -GGCC------------AGGugC-UGCGGCuCUGCCGUGg -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 41973 | 0.71 | 0.288029 |
Target: 5'- aCCGuGacgcCUACGGCGUCGGGcCGGCGCUc -3' miRNA: 3'- -GGC-Ca---GGUGCUGCGGCUCuGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 42468 | 0.66 | 0.572207 |
Target: 5'- aCUGGUCgACGuACGCCucGAacuccuucacguCGGCGCg -3' miRNA: 3'- -GGCCAGgUGC-UGCGGcuCU------------GCCGUGg -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 43520 | 0.66 | 0.572207 |
Target: 5'- aCgGGUCCuuGccccaGCCcuuGAGGCGGCGCa -3' miRNA: 3'- -GgCCAGGugCug---CGG---CUCUGCCGUGg -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 44295 | 0.68 | 0.406625 |
Target: 5'- uCgGGUCCAUGAUGUCGuGcuUGaGCACCu -3' miRNA: 3'- -GgCCAGGUGCUGCGGCuCu-GC-CGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 44404 | 0.71 | 0.274442 |
Target: 5'- cCCGGuUCCGCuACGCgGAcGACGGgAUCg -3' miRNA: 3'- -GGCC-AGGUGcUGCGgCU-CUGCCgUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 46128 | 0.71 | 0.274442 |
Target: 5'- gCCGcGUCgGCaGCGCCGAGcgacaGCaGCACCg -3' miRNA: 3'- -GGC-CAGgUGcUGCGGCUC-----UGcCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 48604 | 0.69 | 0.372152 |
Target: 5'- uCCGGgcaCCGCGugGCguuCGGGAaCuGCGCCu -3' miRNA: 3'- -GGCCa--GGUGCugCG---GCUCU-GcCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 49899 | 0.7 | 0.324294 |
Target: 5'- gCCGGUgCCgAUGGCGgUGAccuucucgGugGGCACCg -3' miRNA: 3'- -GGCCA-GG-UGCUGCgGCU--------CugCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 50397 | 0.67 | 0.465741 |
Target: 5'- aCCGGcCCugGAgGCCGGuucuaugucaaguauGAcCGGC-CCu -3' miRNA: 3'- -GGCCaGGugCUgCGGCU---------------CU-GCCGuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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