miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18559 3' -59.2 NC_004682.1 + 33507 0.68 0.414653
Target:  5'- gCC-GUCCAUGACGCCGuucugcgAGAccCGGUucACCa -3'
miRNA:   3'- -GGcCAGGUGCUGCGGC-------UCU--GCCG--UGG- -5'
18559 3' -59.2 NC_004682.1 + 31702 0.66 0.561832
Target:  5'- cCCGGUCCcCuuCGuuGGGAcCGGCuaggguaaACCa -3'
miRNA:   3'- -GGCCAGGuGcuGCggCUCU-GCCG--------UGG- -5'
18559 3' -59.2 NC_004682.1 + 30825 0.68 0.45242
Target:  5'- gCCGGcCC-CGAUGCuCGGGA--GCGCCu -3'
miRNA:   3'- -GGCCaGGuGCUGCG-GCUCUgcCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 30470 0.67 0.491003
Target:  5'- aCCGGUCUgcuCGGCcaCCGucuUGGCACCa -3'
miRNA:   3'- -GGCCAGGu--GCUGc-GGCucuGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 30370 0.66 0.530027
Target:  5'- gCGGUUaGCGuccuccaGCGUCGuGAUGGUGCCg -3'
miRNA:   3'- gGCCAGgUGC-------UGCGGCuCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 29313 0.67 0.491003
Target:  5'- uCCGGgucUCCugGugGUCGGugccGACGuGgACCg -3'
miRNA:   3'- -GGCC---AGGugCugCGGCU----CUGC-CgUGG- -5'
18559 3' -59.2 NC_004682.1 + 29237 0.73 0.225198
Target:  5'- -aGGUCUGCGAgacaGCCGuGGACGGCGgCg -3'
miRNA:   3'- ggCCAGGUGCUg---CGGC-UCUGCCGUgG- -5'
18559 3' -59.2 NC_004682.1 + 29121 0.68 0.405739
Target:  5'- aCCGcGUCCAUcAUGCCGcccAGAggcgggaggucgaUGGCACCa -3'
miRNA:   3'- -GGC-CAGGUGcUGCGGC---UCU-------------GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 28780 0.66 0.572207
Target:  5'- aCGGugUCCGgGAUcggaaaGCCGAGAaCGGUuguGCCa -3'
miRNA:   3'- gGCC--AGGUgCUG------CGGCUCU-GCCG---UGG- -5'
18559 3' -59.2 NC_004682.1 + 28634 0.67 0.461914
Target:  5'- aCCGGUCCA-G-UGCCGGccuuuguauCGGUACCg -3'
miRNA:   3'- -GGCCAGGUgCuGCGGCUcu-------GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 27977 0.66 0.561832
Target:  5'- aCGG-CCAUGAUGCCac--CGcGCACCa -3'
miRNA:   3'- gGCCaGGUGCUGCGGcucuGC-CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 27396 0.71 0.274442
Target:  5'- gCCGGUaCGgGugGCCacGGGCGGCACa -3'
miRNA:   3'- -GGCCAgGUgCugCGGc-UCUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 26554 0.69 0.39782
Target:  5'- aCGGUCCACGGguUCGGGugugGCGGCuuGCCc -3'
miRNA:   3'- gGCCAGGUGCUgcGGCUC----UGCCG--UGG- -5'
18559 3' -59.2 NC_004682.1 + 26384 0.71 0.301422
Target:  5'- cCUGGaucugcuUCCACGuCGCCGGGucgaacgucgGCGGgGCCa -3'
miRNA:   3'- -GGCC-------AGGUGCuGCGGCUC----------UGCCgUGG- -5'
18559 3' -59.2 NC_004682.1 + 25612 0.72 0.261373
Target:  5'- gCCGGUCUcCGgcucGCGCCGu-ACGGUGCCg -3'
miRNA:   3'- -GGCCAGGuGC----UGCGGCucUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 24993 0.8 0.067941
Target:  5'- gCCGGg-UACGACGCCGAcucGGCGGCAUCu -3'
miRNA:   3'- -GGCCagGUGCUGCGGCU---CUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 24640 0.75 0.157091
Target:  5'- uCCGGUgCCAgGAUGUCGAGGC-GUGCCg -3'
miRNA:   3'- -GGCCA-GGUgCUGCGGCUCUGcCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 24402 0.72 0.248815
Target:  5'- aCGGUgCugGACGCUGAGGgcaacccgaucCGGCugGCCc -3'
miRNA:   3'- gGCCAgGugCUGCGGCUCU-----------GCCG--UGG- -5'
18559 3' -59.2 NC_004682.1 + 23376 0.66 0.565976
Target:  5'- aCGGaCCugGG-GCCGAGcuugaaggcuggcuCGGCACUg -3'
miRNA:   3'- gGCCaGGugCUgCGGCUCu-------------GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 22763 0.67 0.51086
Target:  5'- cCCGagcGUCUuCGuCGCCGAGGgaGGCACa -3'
miRNA:   3'- -GGC---CAGGuGCuGCGGCUCUg-CCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.