miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18559 3' -59.2 NC_004682.1 + 14364 0.69 0.372152
Target:  5'- gCGcUCUACGACGCUGuGAa-GCACCa -3'
miRNA:   3'- gGCcAGGUGCUGCGGCuCUgcCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 17685 0.7 0.331943
Target:  5'- aUCGG--CACGACGCUGAccACGGCGCUg -3'
miRNA:   3'- -GGCCagGUGCUGCGGCUc-UGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 9561 0.7 0.324294
Target:  5'- aCCGG-CCA-GACGCUGuucGACGcGUACCu -3'
miRNA:   3'- -GGCCaGGUgCUGCGGCu--CUGC-CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 14128 0.7 0.319768
Target:  5'- cCCGcGUCCAgGcCGUCGuccucccgauccuccGGGCGGCGCUg -3'
miRNA:   3'- -GGC-CAGGUgCuGCGGC---------------UCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 26384 0.71 0.301422
Target:  5'- cCUGGaucugcuUCCACGuCGCCGGGucgaacgucgGCGGgGCCa -3'
miRNA:   3'- -GGCC-------AGGUGCuGCGGCUC----------UGCCgUGG- -5'
18559 3' -59.2 NC_004682.1 + 44404 0.71 0.274442
Target:  5'- cCCGGuUCCGCuACGCgGAcGACGGgAUCg -3'
miRNA:   3'- -GGCC-AGGUGcUGCGgCU-CUGCCgUGG- -5'
18559 3' -59.2 NC_004682.1 + 46128 0.71 0.274442
Target:  5'- gCCGcGUCgGCaGCGCCGAGcgacaGCaGCACCg -3'
miRNA:   3'- -GGC-CAGgUGcUGCGGCUC-----UGcCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 10999 0.66 0.559763
Target:  5'- uCCcGUUCGCGGCuggcaagagcgcaGCCGAGgcaucggGCGGCGCg -3'
miRNA:   3'- -GGcCAGGUGCUG-------------CGGCUC-------UGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 35850 0.66 0.541243
Target:  5'- cCCGG-CgCAcCGACGCCuuGugGGCguggaaGCCg -3'
miRNA:   3'- -GGCCaG-GU-GCUGCGGcuCugCCG------UGG- -5'
18559 3' -59.2 NC_004682.1 + 22052 0.66 0.541243
Target:  5'- cCCuGUCCGCucucggccuGACgGCCugugaggggGAGACGaGCACCa -3'
miRNA:   3'- -GGcCAGGUG---------CUG-CGG---------CUCUGC-CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 14487 0.66 0.541243
Target:  5'- aCCgGGUCCGCaGgGUCGAGcACGuCACCc -3'
miRNA:   3'- -GG-CCAGGUGcUgCGGCUC-UGCcGUGG- -5'
18559 3' -59.2 NC_004682.1 + 11845 0.66 0.531043
Target:  5'- cCCGuUCCACGGCGauGAGAcgccuuCGGCGUCg -3'
miRNA:   3'- -GGCcAGGUGCUGCggCUCU------GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 18968 0.66 0.561832
Target:  5'- aCGuUCCACGAacugcaaaGCCuguaGGAgGGCACCu -3'
miRNA:   3'- gGCcAGGUGCUg-------CGGc---UCUgCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 27977 0.66 0.561832
Target:  5'- aCGG-CCAUGAUGCCac--CGcGCACCa -3'
miRNA:   3'- gGCCaGGUGCUGCGGcucuGC-CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 31702 0.66 0.561832
Target:  5'- cCCGGUCCcCuuCGuuGGGAcCGGCuaggguaaACCa -3'
miRNA:   3'- -GGCCAGGuGcuGCggCUCU-GCCG--------UGG- -5'
18559 3' -59.2 NC_004682.1 + 36721 0.66 0.561832
Target:  5'- aCGG-CCugGACGCgGGGcaucugggccauGCGGaACCu -3'
miRNA:   3'- gGCCaGGugCUGCGgCUC------------UGCCgUGG- -5'
18559 3' -59.2 NC_004682.1 + 43520 0.66 0.572207
Target:  5'- aCgGGUCCuuGccccaGCCcuuGAGGCGGCGCa -3'
miRNA:   3'- -GgCCAGGugCug---CGG---CUCUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 35955 0.66 0.572207
Target:  5'- gCCGaacacaCCagGCGugGUCGAGGCGuucGCGCCg -3'
miRNA:   3'- -GGCca----GG--UGCugCGGCUCUGC---CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 28780 0.66 0.572207
Target:  5'- aCGGugUCCGgGAUcggaaaGCCGAGAaCGGUuguGCCa -3'
miRNA:   3'- gGCC--AGGUgCUG------CGGCUCU-GCCG---UGG- -5'
18559 3' -59.2 NC_004682.1 + 39039 1.13 0.000257
Target:  5'- gCCGGUCCACGACGCCGAGACGGCACCg -3'
miRNA:   3'- -GGCCAGGUGCUGCGGCUCUGCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.