Results 61 - 80 of 97 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 29121 | 0.68 | 0.405739 |
Target: 5'- aCCGcGUCCAUcAUGCCGcccAGAggcgggaggucgaUGGCACCa -3' miRNA: 3'- -GGC-CAGGUGcUGCGGC---UCU-------------GCCGUGG- -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 17370 | 0.69 | 0.39782 |
Target: 5'- gCGGcaaCgGCGGCaGCCGGGGuggUGGCACCc -3' miRNA: 3'- gGCCa--GgUGCUG-CGGCUCU---GCCGUGG- -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 5296 | 0.69 | 0.389138 |
Target: 5'- gCCGGcCC-CGGCGC--AGGCGGguCCa -3' miRNA: 3'- -GGCCaGGuGCUGCGgcUCUGCCguGG- -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 22763 | 0.67 | 0.51086 |
Target: 5'- cCCGagcGUCUuCGuCGCCGAGGgaGGCACa -3' miRNA: 3'- -GGC---CAGGuGCuGCGGCUCUg-CCGUGg -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 22137 | 0.66 | 0.520913 |
Target: 5'- --cGUCC-CGcCGCCGccgcgaguGGGCGGCAUCg -3' miRNA: 3'- ggcCAGGuGCuGCGGC--------UCUGCCGUGG- -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 28780 | 0.66 | 0.572207 |
Target: 5'- aCGGugUCCGgGAUcggaaaGCCGAGAaCGGUuguGCCa -3' miRNA: 3'- gGCC--AGGUgCUG------CGGCUCU-GCCG---UGG- -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 35955 | 0.66 | 0.572207 |
Target: 5'- gCCGaacacaCCagGCGugGUCGAGGCGuucGCGCCg -3' miRNA: 3'- -GGCca----GG--UGCugCGGCUCUGC---CGUGG- -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 43520 | 0.66 | 0.572207 |
Target: 5'- aCgGGUCCuuGccccaGCCcuuGAGGCGGCGCa -3' miRNA: 3'- -GgCCAGGugCug---CGG---CUCUGCCGUGg -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 36721 | 0.66 | 0.561832 |
Target: 5'- aCGG-CCugGACGCgGGGcaucugggccauGCGGaACCu -3' miRNA: 3'- gGCCaGGugCUGCGgCUC------------UGCCgUGG- -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 31702 | 0.66 | 0.561832 |
Target: 5'- cCCGGUCCcCuuCGuuGGGAcCGGCuaggguaaACCa -3' miRNA: 3'- -GGCCAGGuGcuGCggCUCU-GCCG--------UGG- -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 27977 | 0.66 | 0.561832 |
Target: 5'- aCGG-CCAUGAUGCCac--CGcGCACCa -3' miRNA: 3'- gGCCaGGUGCUGCGGcucuGC-CGUGG- -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 18968 | 0.66 | 0.561832 |
Target: 5'- aCGuUCCACGAacugcaaaGCCuguaGGAgGGCACCu -3' miRNA: 3'- gGCcAGGUGCUg-------CGGc---UCUgCCGUGG- -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 10999 | 0.66 | 0.559763 |
Target: 5'- uCCcGUUCGCGGCuggcaagagcgcaGCCGAGgcaucggGCGGCGCg -3' miRNA: 3'- -GGcCAGGUGCUG-------------CGGCUC-------UGCCGUGg -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 35850 | 0.66 | 0.541243 |
Target: 5'- cCCGG-CgCAcCGACGCCuuGugGGCguggaaGCCg -3' miRNA: 3'- -GGCCaG-GU-GCUGCGGcuCugCCG------UGG- -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 22052 | 0.66 | 0.541243 |
Target: 5'- cCCuGUCCGCucucggccuGACgGCCugugaggggGAGACGaGCACCa -3' miRNA: 3'- -GGcCAGGUG---------CUG-CGG---------CUCUGC-CGUGG- -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 14487 | 0.66 | 0.541243 |
Target: 5'- aCCgGGUCCGCaGgGUCGAGcACGuCACCc -3' miRNA: 3'- -GG-CCAGGUGcUgCGGCUC-UGCcGUGG- -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 11845 | 0.66 | 0.531043 |
Target: 5'- cCCGuUCCACGGCGauGAGAcgccuuCGGCGUCg -3' miRNA: 3'- -GGCcAGGUGCUGCggCUCU------GCCGUGG- -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 38488 | 0.66 | 0.531043 |
Target: 5'- gUCGc-CCAUGACGCCGAccacGCGGUugCc -3' miRNA: 3'- -GGCcaGGUGCUGCGGCUc---UGCCGugG- -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 18142 | 0.66 | 0.531043 |
Target: 5'- -aGGcCCGCGAagcgGCCaGGGCGGUccuGCCg -3' miRNA: 3'- ggCCaGGUGCUg---CGGcUCUGCCG---UGG- -5' |
|||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 30370 | 0.66 | 0.530027 |
Target: 5'- gCGGUUaGCGuccuccaGCGUCGuGAUGGUGCCg -3' miRNA: 3'- gGCCAGgUGC-------UGCGGCuCUGCCGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home