miRNA display CGI


Results 81 - 97 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18559 3' -59.2 NC_004682.1 + 43520 0.66 0.572207
Target:  5'- aCgGGUCCuuGccccaGCCcuuGAGGCGGCGCa -3'
miRNA:   3'- -GgCCAGGugCug---CGG---CUCUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 35955 0.66 0.572207
Target:  5'- gCCGaacacaCCagGCGugGUCGAGGCGuucGCGCCg -3'
miRNA:   3'- -GGCca----GG--UGCugCGGCUCUGC---CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 28780 0.66 0.572207
Target:  5'- aCGGugUCCGgGAUcggaaaGCCGAGAaCGGUuguGCCa -3'
miRNA:   3'- gGCC--AGGUgCUG------CGGCUCU-GCCG---UGG- -5'
18559 3' -59.2 NC_004682.1 + 14487 0.66 0.541243
Target:  5'- aCCgGGUCCGCaGgGUCGAGcACGuCACCc -3'
miRNA:   3'- -GG-CCAGGUGcUgCGGCUC-UGCcGUGG- -5'
18559 3' -59.2 NC_004682.1 + 11845 0.66 0.531043
Target:  5'- cCCGuUCCACGGCGauGAGAcgccuuCGGCGUCg -3'
miRNA:   3'- -GGCcAGGUGCUGCggCUCU------GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 38488 0.66 0.531043
Target:  5'- gUCGc-CCAUGACGCCGAccacGCGGUugCc -3'
miRNA:   3'- -GGCcaGGUGCUGCGGCUc---UGCCGugG- -5'
18559 3' -59.2 NC_004682.1 + 6542 0.67 0.471511
Target:  5'- cCCGGUCUacgagaACGugGCCGAccucuugcaGCGGuCACg -3'
miRNA:   3'- -GGCCAGG------UGCugCGGCUc--------UGCC-GUGg -5'
18559 3' -59.2 NC_004682.1 + 2504 0.67 0.481209
Target:  5'- aCGGaUCaaggGCGACGacaaCGGcGACGGCAUCg -3'
miRNA:   3'- gGCC-AGg---UGCUGCg---GCU-CUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 3653 0.67 0.481209
Target:  5'- aCCGugaGUaCCGC--CGaCGAGGCGGCACCg -3'
miRNA:   3'- -GGC---CA-GGUGcuGCgGCUCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 18003 0.67 0.487074
Target:  5'- gCGGUCaaggaucugaucgACG-CGCCGGGACGcggcuacuuccGCGCCa -3'
miRNA:   3'- gGCCAGg------------UGCuGCGGCUCUGC-----------CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 4930 0.67 0.491003
Target:  5'- cCCGGaCgACGGCGagcCCGAGuGCGGCuACUc -3'
miRNA:   3'- -GGCCaGgUGCUGC---GGCUC-UGCCG-UGG- -5'
18559 3' -59.2 NC_004682.1 + 34100 0.67 0.500888
Target:  5'- aCCGGccuucUCCGCGucgucgccgaACGCCGAGAacagcCGGgACa -3'
miRNA:   3'- -GGCC-----AGGUGC----------UGCGGCUCU-----GCCgUGg -5'
18559 3' -59.2 NC_004682.1 + 22763 0.67 0.51086
Target:  5'- cCCGagcGUCUuCGuCGCCGAGGgaGGCACa -3'
miRNA:   3'- -GGC---CAGGuGCuGCGGCUCUg-CCGUGg -5'
18559 3' -59.2 NC_004682.1 + 22137 0.66 0.520913
Target:  5'- --cGUCC-CGcCGCCGccgcgaguGGGCGGCAUCg -3'
miRNA:   3'- ggcCAGGuGCuGCGGC--------UCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 30370 0.66 0.530027
Target:  5'- gCGGUUaGCGuccuccaGCGUCGuGAUGGUGCCg -3'
miRNA:   3'- gGCCAGgUGC-------UGCGGCuCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 18142 0.66 0.531043
Target:  5'- -aGGcCCGCGAagcgGCCaGGGCGGUccuGCCg -3'
miRNA:   3'- ggCCaGGUGCUg---CGGcUCUGCCG---UGG- -5'
18559 3' -59.2 NC_004682.1 + 42468 0.66 0.572207
Target:  5'- aCUGGUCgACGuACGCCucGAacuccuucacguCGGCGCg -3'
miRNA:   3'- -GGCCAGgUGC-UGCGGcuCU------------GCCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.