miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18559 3' -59.2 NC_004682.1 + 2504 0.67 0.481209
Target:  5'- aCGGaUCaaggGCGACGacaaCGGcGACGGCAUCg -3'
miRNA:   3'- gGCC-AGg---UGCUGCg---GCU-CUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 4930 0.67 0.491003
Target:  5'- cCCGGaCgACGGCGagcCCGAGuGCGGCuACUc -3'
miRNA:   3'- -GGCCaGgUGCUGC---GGCUC-UGCCG-UGG- -5'
18559 3' -59.2 NC_004682.1 + 22052 0.66 0.541243
Target:  5'- cCCuGUCCGCucucggccuGACgGCCugugaggggGAGACGaGCACCa -3'
miRNA:   3'- -GGcCAGGUG---------CUG-CGG---------CUCUGC-CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 43520 0.66 0.572207
Target:  5'- aCgGGUCCuuGccccaGCCcuuGAGGCGGCGCa -3'
miRNA:   3'- -GgCCAGGugCug---CGG---CUCUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 10627 0.69 0.36385
Target:  5'- gUCGG-CCACucgaugGGCGgCGGGAUGGuCGCCg -3'
miRNA:   3'- -GGCCaGGUG------CUGCgGCUCUGCC-GUGG- -5'
18559 3' -59.2 NC_004682.1 + 33507 0.68 0.414653
Target:  5'- gCC-GUCCAUGACGCCGuucugcgAGAccCGGUucACCa -3'
miRNA:   3'- -GGcCAGGUGCUGCGGC-------UCU--GCCG--UGG- -5'
18559 3' -59.2 NC_004682.1 + 22763 0.67 0.51086
Target:  5'- cCCGagcGUCUuCGuCGCCGAGGgaGGCACa -3'
miRNA:   3'- -GGC---CAGGuGCuGCGGCUCUg-CCGUGg -5'
18559 3' -59.2 NC_004682.1 + 35955 0.66 0.572207
Target:  5'- gCCGaacacaCCagGCGugGUCGAGGCGuucGCGCCg -3'
miRNA:   3'- -GGCca----GG--UGCugCGGCUCUGC---CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 13398 0.68 0.45242
Target:  5'- gCGGUCUACGAagGCCcguuCGGCAUCc -3'
miRNA:   3'- gGCCAGGUGCUg-CGGcucuGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 28780 0.66 0.572207
Target:  5'- aCGGugUCCGgGAUcggaaaGCCGAGAaCGGUuguGCCa -3'
miRNA:   3'- gGCC--AGGUgCUG------CGGCUCU-GCCG---UGG- -5'
18559 3' -59.2 NC_004682.1 + 34100 0.67 0.500888
Target:  5'- aCCGGccuucUCCGCGucgucgccgaACGCCGAGAacagcCGGgACa -3'
miRNA:   3'- -GGCC-----AGGUGC----------UGCGGCUCU-----GCCgUGg -5'
18559 3' -59.2 NC_004682.1 + 6542 0.67 0.471511
Target:  5'- cCCGGUCUacgagaACGugGCCGAccucuugcaGCGGuCACg -3'
miRNA:   3'- -GGCCAGG------UGCugCGGCUc--------UGCC-GUGg -5'
18559 3' -59.2 NC_004682.1 + 18142 0.66 0.531043
Target:  5'- -aGGcCCGCGAagcgGCCaGGGCGGUccuGCCg -3'
miRNA:   3'- ggCCaGGUGCUg---CGGcUCUGCCG---UGG- -5'
18559 3' -59.2 NC_004682.1 + 14487 0.66 0.541243
Target:  5'- aCCgGGUCCGCaGgGUCGAGcACGuCACCc -3'
miRNA:   3'- -GG-CCAGGUGcUgCGGCUC-UGCcGUGG- -5'
18559 3' -59.2 NC_004682.1 + 18968 0.66 0.561832
Target:  5'- aCGuUCCACGAacugcaaaGCCuguaGGAgGGCACCu -3'
miRNA:   3'- gGCcAGGUGCUg-------CGGc---UCUgCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 36721 0.66 0.561832
Target:  5'- aCGG-CCugGACGCgGGGcaucugggccauGCGGaACCu -3'
miRNA:   3'- gGCCaGGugCUGCGgCUC------------UGCCgUGG- -5'
18559 3' -59.2 NC_004682.1 + 13574 0.7 0.321271
Target:  5'- aCCGGgcugguugaccacCCACGGCcaCCGuGGCGGCAUCc -3'
miRNA:   3'- -GGCCa------------GGUGCUGc-GGCuCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 14259 0.7 0.331943
Target:  5'- -aGGUCCagaccuACGACuCCGAcGGCGGCaaGCCg -3'
miRNA:   3'- ggCCAGG------UGCUGcGGCU-CUGCCG--UGG- -5'
18559 3' -59.2 NC_004682.1 + 29121 0.68 0.405739
Target:  5'- aCCGcGUCCAUcAUGCCGcccAGAggcgggaggucgaUGGCACCa -3'
miRNA:   3'- -GGC-CAGGUGcUGCGGC---UCU-------------GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 41879 0.68 0.406625
Target:  5'- gCCGGaagcccucaagcUCCugGcGCGCUGcGAUGGCGCg -3'
miRNA:   3'- -GGCC------------AGGugC-UGCGGCuCUGCCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.