miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18559 3' -59.2 NC_004682.1 + 33927 0.73 0.214119
Target:  5'- gCCGaGgCCACaGCGCCGAcacCGGCACCg -3'
miRNA:   3'- -GGC-CaGGUGcUGCGGCUcu-GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 30370 0.66 0.530027
Target:  5'- gCGGUUaGCGuccuccaGCGUCGuGAUGGUGCCg -3'
miRNA:   3'- gGCCAGgUGC-------UGCGGCuCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 3653 0.67 0.481209
Target:  5'- aCCGugaGUaCCGC--CGaCGAGGCGGCACCg -3'
miRNA:   3'- -GGC---CA-GGUGcuGCgGCUCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 30825 0.68 0.45242
Target:  5'- gCCGGcCC-CGAUGCuCGGGA--GCGCCu -3'
miRNA:   3'- -GGCCaGGuGCUGCG-GCUCUgcCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 41879 0.68 0.406625
Target:  5'- gCCGGaagcccucaagcUCCugGcGCGCUGcGAUGGCGCg -3'
miRNA:   3'- -GGCC------------AGGugC-UGCGGCuCUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 39039 1.13 0.000257
Target:  5'- gCCGGUCCACGACGCCGAGACGGCACCg -3'
miRNA:   3'- -GGCCAGGUGCUGCGGCUCUGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 10105 0.72 0.261373
Target:  5'- gCCGGUCCagaucgagaagcACGAaGCCGAGugGGacgaGCa -3'
miRNA:   3'- -GGCCAGG------------UGCUgCGGCUCugCCg---UGg -5'
18559 3' -59.2 NC_004682.1 + 41973 0.71 0.288029
Target:  5'- aCCGuGacgcCUACGGCGUCGGGcCGGCGCUc -3'
miRNA:   3'- -GGC-Ca---GGUGCUGCGGCUCuGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 49899 0.7 0.324294
Target:  5'- gCCGGUgCCgAUGGCGgUGAccuucucgGugGGCACCg -3'
miRNA:   3'- -GGCCA-GG-UGCUGCgGCU--------CugCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 5296 0.69 0.389138
Target:  5'- gCCGGcCC-CGGCGC--AGGCGGguCCa -3'
miRNA:   3'- -GGCCaGGuGCUGCGgcUCUGCCguGG- -5'
18559 3' -59.2 NC_004682.1 + 19389 0.68 0.415551
Target:  5'- gCUGuaugUCACGACGCCG-GAuucCGGCACUa -3'
miRNA:   3'- -GGCca--GGUGCUGCGGCuCU---GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 7693 0.68 0.442101
Target:  5'- aCGGUCaCGCGAUGCaCGGcgcaaucGAgGGCaACCu -3'
miRNA:   3'- gGCCAG-GUGCUGCG-GCU-------CUgCCG-UGG- -5'
18559 3' -59.2 NC_004682.1 + 9766 0.68 0.45242
Target:  5'- uCCGGUCCuCGGagaGCCGAcuggugaaGACGGUcgaGCg -3'
miRNA:   3'- -GGCCAGGuGCUg--CGGCU--------CUGCCG---UGg -5'
18559 3' -59.2 NC_004682.1 + 16738 0.68 0.415551
Target:  5'- uUCGG-CgACGACGCgGAGAaGGCcgguaGCCa -3'
miRNA:   3'- -GGCCaGgUGCUGCGgCUCUgCCG-----UGG- -5'
18559 3' -59.2 NC_004682.1 + 40788 0.68 0.406625
Target:  5'- aUCGGUCUGCGAUGUCGucagcccccCGaGCGCCa -3'
miRNA:   3'- -GGCCAGGUGCUGCGGCucu------GC-CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 29237 0.73 0.225198
Target:  5'- -aGGUCUGCGAgacaGCCGuGGACGGCGgCg -3'
miRNA:   3'- ggCCAGGUGCUg---CGGC-UCUGCCGUgG- -5'
18559 3' -59.2 NC_004682.1 + 28634 0.67 0.461914
Target:  5'- aCCGGUCCA-G-UGCCGGccuuuguauCGGUACCg -3'
miRNA:   3'- -GGCCAGGUgCuGCGGCUcu-------GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 46128 0.71 0.274442
Target:  5'- gCCGcGUCgGCaGCGCCGAGcgacaGCaGCACCg -3'
miRNA:   3'- -GGC-CAGgUGcUGCGGCUC-----UGcCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 44404 0.71 0.274442
Target:  5'- cCCGGuUCCGCuACGCgGAcGACGGgAUCg -3'
miRNA:   3'- -GGCC-AGGUGcUGCGgCU-CUGCCgUGG- -5'
18559 3' -59.2 NC_004682.1 + 26384 0.71 0.301422
Target:  5'- cCUGGaucugcuUCCACGuCGCCGGGucgaacgucgGCGGgGCCa -3'
miRNA:   3'- -GGCC-------AGGUGCuGCGGCUC----------UGCCgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.