Results 61 - 80 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 27396 | 0.71 | 0.274442 |
Target: 5'- gCCGGUaCGgGugGCCacGGGCGGCACa -3' miRNA: 3'- -GGCCAgGUgCugCGGc-UCUGCCGUGg -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 4383 | 0.72 | 0.261373 |
Target: 5'- gCCGccgCCACgGGCGCgGAGcGCGGUGCCg -3' miRNA: 3'- -GGCca-GGUG-CUGCGgCUC-UGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 29237 | 0.73 | 0.225198 |
Target: 5'- -aGGUCUGCGAgacaGCCGuGGACGGCGgCg -3' miRNA: 3'- ggCCAGGUGCUg---CGGC-UCUGCCGUgG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 4661 | 0.73 | 0.219599 |
Target: 5'- cCCGGaCgGggUGACGaCCGcGACGGCACCg -3' miRNA: 3'- -GGCCaGgU--GCUGC-GGCuCUGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 6308 | 0.74 | 0.174388 |
Target: 5'- aCGGUCCACGGCaCCG-GACaGGCcgACCc -3' miRNA: 3'- gGCCAGGUGCUGcGGCuCUG-CCG--UGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 40788 | 0.68 | 0.406625 |
Target: 5'- aUCGGUCUGCGAUGUCGucagcccccCGaGCGCCa -3' miRNA: 3'- -GGCCAGGUGCUGCGGCucu------GC-CGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 16738 | 0.68 | 0.415551 |
Target: 5'- uUCGG-CgACGACGCgGAGAaGGCcgguaGCCa -3' miRNA: 3'- -GGCCaGgUGCUGCGgCUCUgCCG-----UGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 11957 | 0.66 | 0.572207 |
Target: 5'- gCGGaCCAaGAuCGCCGAGGCaucGCGCUc -3' miRNA: 3'- gGCCaGGUgCU-GCGGCUCUGc--CGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 2161 | 0.66 | 0.572207 |
Target: 5'- aCCGGUCCACaAgGCCccaaggGAGACacggguucccaaGGC-CCa -3' miRNA: 3'- -GGCCAGGUGcUgCGG------CUCUG------------CCGuGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 23376 | 0.66 | 0.565976 |
Target: 5'- aCGGaCCugGG-GCCGAGcuugaaggcuggcuCGGCACUg -3' miRNA: 3'- gGCCaGGugCUgCGGCUCu-------------GCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 1945 | 0.66 | 0.561832 |
Target: 5'- cUCGGUCCcCGAUGgCGAGAucUGGauCGCUg -3' miRNA: 3'- -GGCCAGGuGCUGCgGCUCU--GCC--GUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 14667 | 0.66 | 0.541243 |
Target: 5'- aCCGG-CCugugGACGCCGAccggcuggGACaGCAUCg -3' miRNA: 3'- -GGCCaGGug--CUGCGGCU--------CUGcCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 4894 | 0.66 | 0.541243 |
Target: 5'- cUCGGUgagCC-CG-CGCUacucGGGCGGCACCa -3' miRNA: 3'- -GGCCA---GGuGCuGCGGc---UCUGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 9910 | 0.66 | 0.531043 |
Target: 5'- uCUGGcgcgaUCCGuCGACGCCGAcGuACGcCGCCa -3' miRNA: 3'- -GGCC-----AGGU-GCUGCGGCU-C-UGCcGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 462 | 0.66 | 0.530027 |
Target: 5'- gCCGGuaUCCAgCGGCcuccaggGCCGcuuccGGCGGCGCUc -3' miRNA: 3'- -GGCC--AGGU-GCUG-------CGGCu----CUGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 20436 | 0.66 | 0.520913 |
Target: 5'- -aGGcCCugGGgGCUcgaauGAGccACGGCACCa -3' miRNA: 3'- ggCCaGGugCUgCGG-----CUC--UGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 19892 | 0.68 | 0.456205 |
Target: 5'- -aGGUCCAacagaucagccucguCGGCGauCCGAcgGGCGGCACg -3' miRNA: 3'- ggCCAGGU---------------GCUGC--GGCU--CUGCCGUGg -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 9766 | 0.68 | 0.45242 |
Target: 5'- uCCGGUCCuCGGagaGCCGAcuggugaaGACGGUcgaGCg -3' miRNA: 3'- -GGCCAGGuGCUg--CGGCU--------CUGCCG---UGg -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 7693 | 0.68 | 0.442101 |
Target: 5'- aCGGUCaCGCGAUGCaCGGcgcaaucGAgGGCaACCu -3' miRNA: 3'- gGCCAG-GUGCUGCG-GCU-------CUgCCG-UGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 19389 | 0.68 | 0.415551 |
Target: 5'- gCUGuaugUCACGACGCCG-GAuucCGGCACUa -3' miRNA: 3'- -GGCca--GGUGCUGCGGCuCU---GCCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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