miRNA display CGI


Results 81 - 97 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18559 3' -59.2 NC_004682.1 + 14667 0.66 0.541243
Target:  5'- aCCGG-CCugugGACGCCGAccggcuggGACaGCAUCg -3'
miRNA:   3'- -GGCCaGGug--CUGCGGCU--------CUGcCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 1945 0.66 0.561832
Target:  5'- cUCGGUCCcCGAUGgCGAGAucUGGauCGCUg -3'
miRNA:   3'- -GGCCAGGuGCUGCgGCUCU--GCC--GUGG- -5'
18559 3' -59.2 NC_004682.1 + 23376 0.66 0.565976
Target:  5'- aCGGaCCugGG-GCCGAGcuugaaggcuggcuCGGCACUg -3'
miRNA:   3'- gGCCaGGugCUgCGGCUCu-------------GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 2161 0.66 0.572207
Target:  5'- aCCGGUCCACaAgGCCccaaggGAGACacggguucccaaGGC-CCa -3'
miRNA:   3'- -GGCCAGGUGcUgCGG------CUCUG------------CCGuGG- -5'
18559 3' -59.2 NC_004682.1 + 5113 0.67 0.51086
Target:  5'- gUGGUCgACGccGCGCCGAuccUGGCGCg -3'
miRNA:   3'- gGCCAGgUGC--UGCGGCUcu-GCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 4618 0.67 0.500888
Target:  5'- cCCGGaggCCACGcucGCuGCCGAGAUcgaGGcCAUCg -3'
miRNA:   3'- -GGCCa--GGUGC---UG-CGGCUCUG---CC-GUGG- -5'
18559 3' -59.2 NC_004682.1 + 40788 0.68 0.406625
Target:  5'- aUCGGUCUGCGAUGUCGucagcccccCGaGCGCCa -3'
miRNA:   3'- -GGCCAGGUGCUGCGGCucu------GC-CGUGG- -5'
18559 3' -59.2 NC_004682.1 + 16738 0.68 0.415551
Target:  5'- uUCGG-CgACGACGCgGAGAaGGCcgguaGCCa -3'
miRNA:   3'- -GGCCaGgUGCUGCGgCUCUgCCG-----UGG- -5'
18559 3' -59.2 NC_004682.1 + 19389 0.68 0.415551
Target:  5'- gCUGuaugUCACGACGCCG-GAuucCGGCACUa -3'
miRNA:   3'- -GGCca--GGUGCUGCGGCuCU---GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 7693 0.68 0.442101
Target:  5'- aCGGUCaCGCGAUGCaCGGcgcaaucGAgGGCaACCu -3'
miRNA:   3'- gGCCAG-GUGCUGCG-GCU-------CUgCCG-UGG- -5'
18559 3' -59.2 NC_004682.1 + 9766 0.68 0.45242
Target:  5'- uCCGGUCCuCGGagaGCCGAcuggugaaGACGGUcgaGCg -3'
miRNA:   3'- -GGCCAGGuGCUg--CGGCU--------CUGCCG---UGg -5'
18559 3' -59.2 NC_004682.1 + 19892 0.68 0.456205
Target:  5'- -aGGUCCAacagaucagccucguCGGCGauCCGAcgGGCGGCACg -3'
miRNA:   3'- ggCCAGGU---------------GCUGC--GGCU--CUGCCGUGg -5'
18559 3' -59.2 NC_004682.1 + 28634 0.67 0.461914
Target:  5'- aCCGGUCCA-G-UGCCGGccuuuguauCGGUACCg -3'
miRNA:   3'- -GGCCAGGUgCuGCGGCUcu-------GCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 5545 0.67 0.471511
Target:  5'- aCGGUCuCGCGACGgaucaaCGGGACGaacccgaaCACCg -3'
miRNA:   3'- gGCCAG-GUGCUGCg-----GCUCUGCc-------GUGG- -5'
18559 3' -59.2 NC_004682.1 + 29313 0.67 0.491003
Target:  5'- uCCGGgucUCCugGugGUCGGugccGACGuGgACCg -3'
miRNA:   3'- -GGCC---AGGugCugCGGCU----CUGC-CgUGG- -5'
18559 3' -59.2 NC_004682.1 + 30470 0.67 0.491003
Target:  5'- aCCGGUCUgcuCGGCcaCCGucuUGGCACCa -3'
miRNA:   3'- -GGCCAGGu--GCUGc-GGCucuGCCGUGG- -5'
18559 3' -59.2 NC_004682.1 + 11957 0.66 0.572207
Target:  5'- gCGGaCCAaGAuCGCCGAGGCaucGCGCUc -3'
miRNA:   3'- gGCCaGGUgCU-GCGGCUCUGc--CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.