Results 21 - 40 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18559 | 3' | -59.2 | NC_004682.1 | + | 38488 | 0.66 | 0.531043 |
Target: 5'- gUCGc-CCAUGACGCCGAccacGCGGUugCc -3' miRNA: 3'- -GGCcaGGUGCUGCGGCUc---UGCCGugG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 11845 | 0.66 | 0.531043 |
Target: 5'- cCCGuUCCACGGCGauGAGAcgccuuCGGCGUCg -3' miRNA: 3'- -GGCcAGGUGCUGCggCUCU------GCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 30370 | 0.66 | 0.530027 |
Target: 5'- gCGGUUaGCGuccuccaGCGUCGuGAUGGUGCCg -3' miRNA: 3'- gGCCAGgUGC-------UGCGGCuCUGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 462 | 0.66 | 0.530027 |
Target: 5'- gCCGGuaUCCAgCGGCcuccaggGCCGcuuccGGCGGCGCUc -3' miRNA: 3'- -GGCC--AGGU-GCUG-------CGGCu----CUGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 20436 | 0.66 | 0.520913 |
Target: 5'- -aGGcCCugGGgGCUcgaauGAGccACGGCACCa -3' miRNA: 3'- ggCCaGGugCUgCGG-----CUC--UGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 22137 | 0.66 | 0.520913 |
Target: 5'- --cGUCC-CGcCGCCGccgcgaguGGGCGGCAUCg -3' miRNA: 3'- ggcCAGGuGCuGCGGC--------UCUGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 16467 | 0.66 | 0.520913 |
Target: 5'- gUCGGUCaACGagauGCGCCGAcGA-GGCGCg -3' miRNA: 3'- -GGCCAGgUGC----UGCGGCU-CUgCCGUGg -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 5113 | 0.67 | 0.51086 |
Target: 5'- gUGGUCgACGccGCGCCGAuccUGGCGCg -3' miRNA: 3'- gGCCAGgUGC--UGCGGCUcu-GCCGUGg -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 22763 | 0.67 | 0.51086 |
Target: 5'- cCCGagcGUCUuCGuCGCCGAGGgaGGCACa -3' miRNA: 3'- -GGC---CAGGuGCuGCGGCUCUg-CCGUGg -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 7851 | 0.67 | 0.500888 |
Target: 5'- aCCGGcaugcUCUACGACGCCcuGGA-GGCcCCc -3' miRNA: 3'- -GGCC-----AGGUGCUGCGGc-UCUgCCGuGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 4618 | 0.67 | 0.500888 |
Target: 5'- cCCGGaggCCACGcucGCuGCCGAGAUcgaGGcCAUCg -3' miRNA: 3'- -GGCCa--GGUGC---UG-CGGCUCUG---CC-GUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 34100 | 0.67 | 0.500888 |
Target: 5'- aCCGGccuucUCCGCGucgucgccgaACGCCGAGAacagcCGGgACa -3' miRNA: 3'- -GGCC-----AGGUGC----------UGCGGCUCU-----GCCgUGg -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 30470 | 0.67 | 0.491003 |
Target: 5'- aCCGGUCUgcuCGGCcaCCGucuUGGCACCa -3' miRNA: 3'- -GGCCAGGu--GCUGc-GGCucuGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 29313 | 0.67 | 0.491003 |
Target: 5'- uCCGGgucUCCugGugGUCGGugccGACGuGgACCg -3' miRNA: 3'- -GGCC---AGGugCugCGGCU----CUGC-CgUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 4930 | 0.67 | 0.491003 |
Target: 5'- cCCGGaCgACGGCGagcCCGAGuGCGGCuACUc -3' miRNA: 3'- -GGCCaGgUGCUGC---GGCUC-UGCCG-UGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 18003 | 0.67 | 0.487074 |
Target: 5'- gCGGUCaaggaucugaucgACG-CGCCGGGACGcggcuacuuccGCGCCa -3' miRNA: 3'- gGCCAGg------------UGCuGCGGCUCUGC-----------CGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 2504 | 0.67 | 0.481209 |
Target: 5'- aCGGaUCaaggGCGACGacaaCGGcGACGGCAUCg -3' miRNA: 3'- gGCC-AGg---UGCUGCg---GCU-CUGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 3653 | 0.67 | 0.481209 |
Target: 5'- aCCGugaGUaCCGC--CGaCGAGGCGGCACCg -3' miRNA: 3'- -GGC---CA-GGUGcuGCgGCUCUGCCGUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 5545 | 0.67 | 0.471511 |
Target: 5'- aCGGUCuCGCGACGgaucaaCGGGACGaacccgaaCACCg -3' miRNA: 3'- gGCCAG-GUGCUGCg-----GCUCUGCc-------GUGG- -5' |
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18559 | 3' | -59.2 | NC_004682.1 | + | 6542 | 0.67 | 0.471511 |
Target: 5'- cCCGGUCUacgagaACGugGCCGAccucuugcaGCGGuCACg -3' miRNA: 3'- -GGCCAGG------UGCugCGGCUc--------UGCC-GUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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