miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18559 5' -58.4 NC_004682.1 + 30548 0.66 0.532457
Target:  5'- cGGGcUGUccuUGGUGaucucCCGGUCGGGCCaCGc -3'
miRNA:   3'- -CCCuACG---ACUAC-----GGCCAGCCUGG-GUa -5'
18559 5' -58.4 NC_004682.1 + 36161 0.66 0.49102
Target:  5'- -cGAUGCUGucccaGCCGGUCGGcguCCaCAg -3'
miRNA:   3'- ccCUACGACua---CGGCCAGCCu--GG-GUa -5'
18559 5' -58.4 NC_004682.1 + 47841 0.66 0.480892
Target:  5'- cGGGAUGUcGAcGCCGcGUCGGAgggugacggaguUCCAc -3'
miRNA:   3'- -CCCUACGaCUaCGGC-CAGCCU------------GGGUa -5'
18559 5' -58.4 NC_004682.1 + 15759 0.66 0.480892
Target:  5'- cGGAUGUcgaUGAUGCacuGGaaGGACCCGc -3'
miRNA:   3'- cCCUACG---ACUACGg--CCagCCUGGGUa -5'
18559 5' -58.4 NC_004682.1 + 25831 0.67 0.460948
Target:  5'- uGGAUGCgagcaGAUGCCGccgaGUCGGcgucguACCCGg -3'
miRNA:   3'- cCCUACGa----CUACGGC----CAGCC------UGGGUa -5'
18559 5' -58.4 NC_004682.1 + 33063 0.69 0.335182
Target:  5'- cGGGAUGUgcGGUGCCaGGUUGGuCaCCAg -3'
miRNA:   3'- -CCCUACGa-CUACGG-CCAGCCuG-GGUa -5'
18559 5' -58.4 NC_004682.1 + 48613 0.7 0.289503
Target:  5'- uGGGAccUGCUGG-GCCGGUgGGuCCgGUg -3'
miRNA:   3'- -CCCU--ACGACUaCGGCCAgCCuGGgUA- -5'
18559 5' -58.4 NC_004682.1 + 26947 0.71 0.255287
Target:  5'- gGGGGUGUggccGGUGCCcGUCaGGCCCAg -3'
miRNA:   3'- -CCCUACGa---CUACGGcCAGcCUGGGUa -5'
18559 5' -58.4 NC_004682.1 + 9557 0.72 0.230362
Target:  5'- cGGGucuccacgGUgaagaaccgUGGUgGCCGGUCGGACCCGUc -3'
miRNA:   3'- -CCCua------CG---------ACUA-CGGCCAGCCUGGGUA- -5'
18559 5' -58.4 NC_004682.1 + 48767 0.75 0.150437
Target:  5'- cGGAcccUGCgg--GCCGGUCGGACCCu- -3'
miRNA:   3'- cCCU---ACGacuaCGGCCAGCCUGGGua -5'
18559 5' -58.4 NC_004682.1 + 39075 1.07 0.000623
Target:  5'- gGGGAUGCUGAUGCCGGUCGGACCCAUc -3'
miRNA:   3'- -CCCUACGACUACGGCCAGCCUGGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.