Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18561 | 3' | -60.6 | NC_004682.1 | + | 26174 | 0.7 | 0.247726 |
Target: 5'- cGUCGCCCcgcaucgagaugccGUugcaguugagcGGCGuCCGACCGCaGCGGUa -3' miRNA: 3'- -CAGCGGG--------------UA-----------CUGC-GGCUGGUG-CGCCA- -5' |
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18561 | 3' | -60.6 | NC_004682.1 | + | 23760 | 0.66 | 0.41836 |
Target: 5'- gGUUGgCCGUcACGCCGAucaacuccaccguCCAgGCGGUg -3' miRNA: 3'- -CAGCgGGUAcUGCGGCU-------------GGUgCGCCA- -5' |
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18561 | 3' | -60.6 | NC_004682.1 | + | 14670 | 0.67 | 0.383657 |
Target: 5'- --gGCCUGUGgACGCCGACCG-GCuGGg -3' miRNA: 3'- cagCGGGUAC-UGCGGCUGGUgCG-CCa -5' |
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18561 | 3' | -60.6 | NC_004682.1 | + | 12920 | 0.67 | 0.375072 |
Target: 5'- cGUCaGCCCAcUGACGaagaGACCGCGCuGa -3' miRNA: 3'- -CAG-CGGGU-ACUGCgg--CUGGUGCGcCa -5' |
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18561 | 3' | -60.6 | NC_004682.1 | + | 9596 | 0.66 | 0.447266 |
Target: 5'- -cCGUCCG-GGC-UCGACUACGCGGa -3' miRNA: 3'- caGCGGGUaCUGcGGCUGGUGCGCCa -5' |
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18561 | 3' | -60.6 | NC_004682.1 | + | 4712 | 0.66 | 0.419275 |
Target: 5'- uGUCGCUC--GGCGCUG-CCgACGCGGc -3' miRNA: 3'- -CAGCGGGuaCUGCGGCuGG-UGCGCCa -5' |
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18561 | 3' | -60.6 | NC_004682.1 | + | 4281 | 0.66 | 0.437819 |
Target: 5'- aUCGCCCA-GGCgcuucuGCCGAUCAuCGCGa- -3' miRNA: 3'- cAGCGGGUaCUG------CGGCUGGU-GCGCca -5' |
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18561 | 3' | -60.6 | NC_004682.1 | + | 3867 | 0.67 | 0.375072 |
Target: 5'- gGUCGCCaa-GcUGCUGcGCCACGCGGa -3' miRNA: 3'- -CAGCGGguaCuGCGGC-UGGUGCGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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