miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18561 3' -60.6 NC_004682.1 + 49308 0.7 0.231424
Target:  5'- cGUCGCCgCGugcguUGACGCUGAUCACuuuGUGGUc -3'
miRNA:   3'- -CAGCGG-GU-----ACUGCGGCUGGUG---CGCCA- -5'
18561 3' -60.6 NC_004682.1 + 4281 0.66 0.437819
Target:  5'- aUCGCCCA-GGCgcuucuGCCGAUCAuCGCGa- -3'
miRNA:   3'- cAGCGGGUaCUG------CGGCUGGU-GCGCca -5'
18561 3' -60.6 NC_004682.1 + 48835 0.66 0.419275
Target:  5'- uUCGCCCA-GGCGgUGACgUACGuCGGg -3'
miRNA:   3'- cAGCGGGUaCUGCgGCUG-GUGC-GCCa -5'
18561 3' -60.6 NC_004682.1 + 23760 0.66 0.41836
Target:  5'- gGUUGgCCGUcACGCCGAucaacuccaccguCCAgGCGGUg -3'
miRNA:   3'- -CAGCgGGUAcUGCGGCU-------------GGUgCGCCA- -5'
18561 3' -60.6 NC_004682.1 + 36342 0.67 0.383657
Target:  5'- cGUCGCggGUGACGUgcuCGACCcUGCGGa -3'
miRNA:   3'- -CAGCGggUACUGCG---GCUGGuGCGCCa -5'
18561 3' -60.6 NC_004682.1 + 14670 0.67 0.383657
Target:  5'- --gGCCUGUGgACGCCGACCG-GCuGGg -3'
miRNA:   3'- cagCGGGUAC-UGCGGCUGGUgCG-CCa -5'
18561 3' -60.6 NC_004682.1 + 41424 0.67 0.383657
Target:  5'- --aGCCUccgGUGACguggugcagGCCGACCACGCaGGc -3'
miRNA:   3'- cagCGGG---UACUG---------CGGCUGGUGCG-CCa -5'
18561 3' -60.6 NC_004682.1 + 12920 0.67 0.375072
Target:  5'- cGUCaGCCCAcUGACGaagaGACCGCGCuGa -3'
miRNA:   3'- -CAG-CGGGU-ACUGCgg--CUGGUGCGcCa -5'
18561 3' -60.6 NC_004682.1 + 30643 0.69 0.275635
Target:  5'- gGUCGCCC--GACaGCgCGGCCaggACGCGGa -3'
miRNA:   3'- -CAGCGGGuaCUG-CG-GCUGG---UGCGCCa -5'
18561 3' -60.6 NC_004682.1 + 26174 0.7 0.247726
Target:  5'- cGUCGCCCcgcaucgagaugccGUugcaguugagcGGCGuCCGACCGCaGCGGUa -3'
miRNA:   3'- -CAGCGGG--------------UA-----------CUGC-GGCUGGUG-CGCCA- -5'
18561 3' -60.6 NC_004682.1 + 47615 0.68 0.326346
Target:  5'- uGUCGCCCuGUGccGCGCCG-CCgACGUaGGUg -3'
miRNA:   3'- -CAGCGGG-UAC--UGCGGCuGG-UGCG-CCA- -5'
18561 3' -60.6 NC_004682.1 + 3867 0.67 0.375072
Target:  5'- gGUCGCCaa-GcUGCUGcGCCACGCGGa -3'
miRNA:   3'- -CAGCGGguaCuGCGGC-UGGUGCGCCa -5'
18561 3' -60.6 NC_004682.1 + 36619 0.67 0.383657
Target:  5'- -aCGCgCC-UGACGuuGACCAucgggaacgUGCGGUa -3'
miRNA:   3'- caGCG-GGuACUGCggCUGGU---------GCGCCA- -5'
18561 3' -60.6 NC_004682.1 + 26323 0.67 0.383657
Target:  5'- --aGCCCcgGuaguccGCGCCGACCugGCuGa -3'
miRNA:   3'- cagCGGGuaC------UGCGGCUGGugCGcCa -5'
18561 3' -60.6 NC_004682.1 + 4712 0.66 0.419275
Target:  5'- uGUCGCUC--GGCGCUG-CCgACGCGGc -3'
miRNA:   3'- -CAGCGGGuaCUGCGGCuGG-UGCGCCa -5'
18561 3' -60.6 NC_004682.1 + 31339 0.66 0.437819
Target:  5'- gGUCGCCUgcGAUGCaGACCAUGacgaccCGGUg -3'
miRNA:   3'- -CAGCGGGuaCUGCGgCUGGUGC------GCCA- -5'
18561 3' -60.6 NC_004682.1 + 36698 0.66 0.445367
Target:  5'- -cCGCCCGgaggaucgggagGACGaCGGCCuggACGCGGg -3'
miRNA:   3'- caGCGGGUa-----------CUGCgGCUGG---UGCGCCa -5'
18561 3' -60.6 NC_004682.1 + 29425 0.66 0.447266
Target:  5'- gGUCGCCCGUGAacaCGUCGauGCC-CuCGGUc -3'
miRNA:   3'- -CAGCGGGUACU---GCGGC--UGGuGcGCCA- -5'
18561 3' -60.6 NC_004682.1 + 9596 0.66 0.447266
Target:  5'- -cCGUCCG-GGC-UCGACUACGCGGa -3'
miRNA:   3'- caGCGGGUaCUGcGGCUGGUGCGCCa -5'
18561 3' -60.6 NC_004682.1 + 38487 1.06 0.000473
Target:  5'- aGUCGCCCAUGACGCCGACCACGCGGUu -3'
miRNA:   3'- -CAGCGGGUACUGCGGCUGGUGCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.