miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18561 5' -54.3 NC_004682.1 + 43399 0.66 0.759124
Target:  5'- cUGACgGCGgcgauggUGaUCCacGCGGCGUGGcGUGg -3'
miRNA:   3'- -ACUGgUGCa------AC-AGG--CGCUGCAUC-CAC- -5'
18561 5' -54.3 NC_004682.1 + 48041 0.66 0.738239
Target:  5'- aGGCCAUaccugggaGUUGcccaggaagaUCCGCGACGggaucUGGGUGc -3'
miRNA:   3'- aCUGGUG--------CAAC----------AGGCGCUGC-----AUCCAC- -5'
18561 5' -54.3 NC_004682.1 + 23366 0.67 0.727629
Target:  5'- cGACaCGcCGUUGUCCGUcGCG-AGGUc -3'
miRNA:   3'- aCUG-GU-GCAACAGGCGcUGCaUCCAc -5'
18561 5' -54.3 NC_004682.1 + 36160 0.67 0.695265
Target:  5'- cGuCCACGUUGUUCaGCccaguGCGUGGGUc -3'
miRNA:   3'- aCuGGUGCAACAGG-CGc----UGCAUCCAc -5'
18561 5' -54.3 NC_004682.1 + 42723 0.68 0.66124
Target:  5'- cGGCCuccagcgucgggaACGggGUUCGCGACGgcUGGGUc -3'
miRNA:   3'- aCUGG-------------UGCaaCAGGCGCUGC--AUCCAc -5'
18561 5' -54.3 NC_004682.1 + 33239 0.68 0.629165
Target:  5'- -aGCCcaGCG-UGUCCGCGAgCGU-GGUGa -3'
miRNA:   3'- acUGG--UGCaACAGGCGCU-GCAuCCAC- -5'
18561 5' -54.3 NC_004682.1 + 47625 0.69 0.574043
Target:  5'- -uGCCGCG----CCGcCGACGUAGGUGa -3'
miRNA:   3'- acUGGUGCaacaGGC-GCUGCAUCCAC- -5'
18561 5' -54.3 NC_004682.1 + 47834 0.69 0.574043
Target:  5'- cUGACCACGggaUGUcgacgCCGCGuCGgaGGGUGa -3'
miRNA:   3'- -ACUGGUGCa--ACA-----GGCGCuGCa-UCCAC- -5'
18561 5' -54.3 NC_004682.1 + 37892 0.71 0.478438
Target:  5'- -cGCCGCGaUGUCCGCGAaguucucuCGcGGGUGc -3'
miRNA:   3'- acUGGUGCaACAGGCGCU--------GCaUCCAC- -5'
18561 5' -54.3 NC_004682.1 + 34938 0.71 0.478438
Target:  5'- cGACUugGaaUGUgCCGCcACGUAGGUGu -3'
miRNA:   3'- aCUGGugCa-ACA-GGCGcUGCAUCCAC- -5'
18561 5' -54.3 NC_004682.1 + 38528 1.09 0.001171
Target:  5'- uUGACCACGUUGUCCGCGACGUAGGUGg -3'
miRNA:   3'- -ACUGGUGCAACAGGCGCUGCAUCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.