Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18562 | 5' | -54.6 | NC_004682.1 | + | 1738 | 0.66 | 0.767537 |
Target: 5'- cGUCGG-CACGcCGAccGGCAaGAUCGUc -3' miRNA: 3'- -CAGCCaGUGCaGCUucCUGU-CUGGCG- -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 2378 | 0.66 | 0.754257 |
Target: 5'- -cCGGUCc---CGAAGGGCcacagggugagacgGGACCGCa -3' miRNA: 3'- caGCCAGugcaGCUUCCUG--------------UCUGGCG- -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 3043 | 0.67 | 0.693891 |
Target: 5'- -cCGG-CACuGUCGGAcaaGGCAGGCCGUc -3' miRNA: 3'- caGCCaGUG-CAGCUUc--CUGUCUGGCG- -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 3121 | 0.67 | 0.726036 |
Target: 5'- -cCGGUUACGggUCGAucacuGGcGCAGGCgGCg -3' miRNA: 3'- caGCCAGUGC--AGCUu----CC-UGUCUGgCG- -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 4841 | 0.66 | 0.747018 |
Target: 5'- aUCGGcaACGUCGAccAGGugAaGuCCGCg -3' miRNA: 3'- cAGCCagUGCAGCU--UCCugU-CuGGCG- -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 6308 | 0.66 | 0.736579 |
Target: 5'- -aCGGUcCACGgcaccGGACAGGCCGa -3' miRNA: 3'- caGCCA-GUGCagcuuCCUGUCUGGCg -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 10038 | 0.71 | 0.468651 |
Target: 5'- -aCGGUgGCGcUCGggGGgcugacgacaucGCAGACCGa -3' miRNA: 3'- caGCCAgUGC-AGCuuCC------------UGUCUGGCg -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 10549 | 0.69 | 0.584475 |
Target: 5'- uUCGGUCAcacCGUCGAAGaGAU-GACCa- -3' miRNA: 3'- cAGCCAGU---GCAGCUUC-CUGuCUGGcg -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 11163 | 0.75 | 0.27253 |
Target: 5'- -cCGGgagUACGUCGAGGGACu--CCGCu -3' miRNA: 3'- caGCCa--GUGCAGCUUCCUGucuGGCG- -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 13521 | 0.66 | 0.767537 |
Target: 5'- -cCGG-UACGUCGGcacGACGGGCCGa -3' miRNA: 3'- caGCCaGUGCAGCUuc-CUGUCUGGCg -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 18271 | 0.66 | 0.756314 |
Target: 5'- uGUCGGUgcCGCGcagagggUCGucGGAgCAGuCCGCa -3' miRNA: 3'- -CAGCCA--GUGC-------AGCuuCCU-GUCuGGCG- -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 22230 | 0.66 | 0.74598 |
Target: 5'- uUCGGUCuuccucuACGgggGGAGGcCGGAUCGCu -3' miRNA: 3'- cAGCCAG-------UGCag-CUUCCuGUCUGGCG- -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 22552 | 0.7 | 0.530652 |
Target: 5'- cGUUGGg--UGUCGAAGGACAcGCCGg -3' miRNA: 3'- -CAGCCaguGCAGCUUCCUGUcUGGCg -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 24041 | 0.71 | 0.478738 |
Target: 5'- cUCGcacCGCGUgcugCGggGGAUGGACCGCu -3' miRNA: 3'- cAGCca-GUGCA----GCuuCCUGUCUGGCG- -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 27004 | 0.66 | 0.747018 |
Target: 5'- cUUGGUCAgGUCGGu-GACcgcauugcccAGGCCGCu -3' miRNA: 3'- cAGCCAGUgCAGCUucCUG----------UCUGGCG- -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 30264 | 0.67 | 0.693891 |
Target: 5'- -cCGGUCACGUCGcgaGACguGGACUGg -3' miRNA: 3'- caGCCAGUGCAGCuucCUG--UCUGGCg -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 30867 | 0.67 | 0.672145 |
Target: 5'- cGUCGcggcaGUCGCGUUGc-GGGCGauGGCCGCu -3' miRNA: 3'- -CAGC-----CAGUGCAGCuuCCUGU--CUGGCG- -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 31164 | 0.66 | 0.757341 |
Target: 5'- aUCGG-CugGUCGGucGGAuuCAGACCa- -3' miRNA: 3'- cAGCCaGugCAGCUu-CCU--GUCUGGcg -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 32106 | 0.67 | 0.726036 |
Target: 5'- -gCGGgguUCACGUCGAAuGACu--CCGCg -3' miRNA: 3'- caGCC---AGUGCAGCUUcCUGucuGGCG- -5' |
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18562 | 5' | -54.6 | NC_004682.1 | + | 32678 | 0.75 | 0.265688 |
Target: 5'- aGUUGGUCAUGuUCGGcAGGACcgcccuGGCCGCu -3' miRNA: 3'- -CAGCCAGUGC-AGCU-UCCUGu-----CUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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