miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18563 3' -59 NC_004682.1 + 49527 0.66 0.55735
Target:  5'- cGGAGGGggaacCGGaGAGGG-GACGGCUc-- -3'
miRNA:   3'- -CCUCCUa----GCC-CUCCUgCUGCCGGacc -5'
18563 3' -59 NC_004682.1 + 49050 0.66 0.55735
Target:  5'- uGGGGGccUCGGuGGGGACGGagaucaGGCugaaggCUGGg -3'
miRNA:   3'- -CCUCCu-AGCC-CUCCUGCUg-----CCG------GACC- -5'
18563 3' -59 NC_004682.1 + 29142 0.66 0.55735
Target:  5'- aGAGG--CGGGAGGuCGAUGGCa--- -3'
miRNA:   3'- cCUCCuaGCCCUCCuGCUGCCGgacc -5'
18563 3' -59 NC_004682.1 + 10055 0.66 0.546995
Target:  5'- -uGGGA-CGaGGAGGAgcaGGCacagGGCCUGGg -3'
miRNA:   3'- ccUCCUaGC-CCUCCUg--CUG----CCGGACC- -5'
18563 3' -59 NC_004682.1 + 6059 0.66 0.545962
Target:  5'- --cGGGUCGGGucGAacgacgccaauacCGGCGGgCUGGu -3'
miRNA:   3'- ccuCCUAGCCCucCU-------------GCUGCCgGACC- -5'
18563 3' -59 NC_004682.1 + 13358 0.66 0.526477
Target:  5'- cGuGGAUCGGGGGGcCGgAUGaGCCUu- -3'
miRNA:   3'- cCuCCUAGCCCUCCuGC-UGC-CGGAcc -5'
18563 3' -59 NC_004682.1 + 5377 0.66 0.526477
Target:  5'- --cGGuUCGGGAaGugGugcuucgaccGCGGCCUGGu -3'
miRNA:   3'- ccuCCuAGCCCUcCugC----------UGCCGGACC- -5'
18563 3' -59 NC_004682.1 + 20517 0.67 0.496268
Target:  5'- aGAGGGcuaugCGGGAGGcCGAaCGGCUcaagccgccucUGGu -3'
miRNA:   3'- cCUCCUa----GCCCUCCuGCU-GCCGG-----------ACC- -5'
18563 3' -59 NC_004682.1 + 7656 0.67 0.472677
Target:  5'- aGGAGGuaggcauggccgagGUCGccaagaaGGccGGGACGACcGCCUGGa -3'
miRNA:   3'- -CCUCC--------------UAGC-------CC--UCCUGCUGcCGGACC- -5'
18563 3' -59 NC_004682.1 + 38051 0.69 0.367632
Target:  5'- gGGGGGAUCGcuuGGGGGAgGcCGGUUUcGGg -3'
miRNA:   3'- -CCUCCUAGC---CCUCCUgCuGCCGGA-CC- -5'
18563 3' -59 NC_004682.1 + 44164 0.7 0.327569
Target:  5'- cGGGGGUCGGaGAcGACGACGGgauCgUGGg -3'
miRNA:   3'- cCUCCUAGCC-CUcCUGCUGCC---GgACC- -5'
18563 3' -59 NC_004682.1 + 36703 1.13 0.000289
Target:  5'- cGGAGGAUCGGGAGGACGACGGCCUGGa -3'
miRNA:   3'- -CCUCCUAGCCCUCCUGCUGCCGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.