miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18563 5' -56.1 NC_004682.1 + 27208 0.66 0.603198
Target:  5'- -gCUGGGCgAUGUGGGauACUUUCUGc- -3'
miRNA:   3'- uaGACCCGgUACGCCU--UGGAGGAUag -5'
18563 5' -56.1 NC_004682.1 + 17845 0.66 0.569789
Target:  5'- --gUGGGCCAUGa-GAGCgUCCUGg- -3'
miRNA:   3'- uagACCCGGUACgcCUUGgAGGAUag -5'
18563 5' -56.1 NC_004682.1 + 23659 0.67 0.558747
Target:  5'- ---cGGGCC-UGCGGc-CCUCCUGc- -3'
miRNA:   3'- uagaCCCGGuACGCCuuGGAGGAUag -5'
18563 5' -56.1 NC_004682.1 + 26639 0.67 0.536853
Target:  5'- -cCUGGGCgAUGCGGAugaacgACCagCC-GUCg -3'
miRNA:   3'- uaGACCCGgUACGCCU------UGGa-GGaUAG- -5'
18563 5' -56.1 NC_004682.1 + 48605 0.67 0.536853
Target:  5'- ---cGGGCCG-GUGGGACCUgCUGg- -3'
miRNA:   3'- uagaCCCGGUaCGCCUUGGAgGAUag -5'
18563 5' -56.1 NC_004682.1 + 40336 0.67 0.526017
Target:  5'- -cCUGGGCCAcgccUGCGucaccGGCCUCCUc-- -3'
miRNA:   3'- uaGACCCGGU----ACGCc----UUGGAGGAuag -5'
18563 5' -56.1 NC_004682.1 + 3483 0.68 0.482531
Target:  5'- -gCUGGGCCGggaGCGGAcggugaaccccccGCCUuCCUcGUCc -3'
miRNA:   3'- uaGACCCGGUa--CGCCU-------------UGGA-GGA-UAG- -5'
18563 5' -56.1 NC_004682.1 + 24558 0.68 0.473215
Target:  5'- ---gGGGCC-UGUGGAGCCUCUc--- -3'
miRNA:   3'- uagaCCCGGuACGCCUUGGAGGauag -5'
18563 5' -56.1 NC_004682.1 + 29755 0.68 0.473215
Target:  5'- gGUCUGGGCUugGC-GAAUCUCCUuGUCc -3'
miRNA:   3'- -UAGACCCGGuaCGcCUUGGAGGA-UAG- -5'
18563 5' -56.1 NC_004682.1 + 30344 0.68 0.446828
Target:  5'- cUCUGGGCCAUgacgguguuccagacGCGGuuagcguCCUCCagcGUCg -3'
miRNA:   3'- uAGACCCGGUA---------------CGCCuu-----GGAGGa--UAG- -5'
18563 5' -56.1 NC_004682.1 + 36738 1.06 0.000881
Target:  5'- cAUCUGGGCCAUGCGGAACCUCCUAUCc -3'
miRNA:   3'- -UAGACCCGGUACGCCUUGGAGGAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.